Detailed information NTG0258494

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: CU648_RS12705
• Genome accession: NZ_CP025122
• Coordinates: 2301427..2302776 (-)
• Length: 449 a.a.
• NCBI ID: WP_101195070.1
• Uniprot ID: -
• Organism: Bacillus sp. HBCD-sjtu
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2296427..2307776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CU648_RS12685 (CU648_12685)	secA	2296749..2299256 (-)	2508	WP_000579383.1	preprotein translocase subunit SecA	-
CU648_RS12690 (CU648_12690)	hpf	2299533..2300075 (-)	543	WP_000671189.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
CU648_RS12695 (CU648_12695)	cspC	2300399..2300596 (-)	198	WP_001990088.1	cold shock protein CspC	-
CU648_RS12700 (CU648_12700)	comFC	2300723..2301427 (-)	705	WP_003162242.1	comF operon protein ComFC	-
CU648_RS12705 (CU648_12705)	comFA	2301427..2302776 (-)	1350	WP_101195070.1	ATP-dependent helicase ComFA	Machinery gene
CU648_RS12710 (CU648_12710)	-	2302904..2304226 (-)	1323	WP_101195071.1	NlpC/P60 family protein	-
CU648_RS12715 (CU648_12715)	-	2304480..2304794 (-)	315	WP_000400857.1	helix-turn-helix domain-containing protein	-
CU648_RS12725 (CU648_12725)	-	2304968..2305810 (-)	843	WP_000844766.1	DegV family protein	-
CU648_RS12730 (CU648_12730)	-	2306050..2306685 (+)	636	WP_000926685.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51263.96 Da
• Isoelectric Point: 9.7162

>NTDB_id=258494 CU648_RS12705 WP_101195070.1 2301427..2302776(-) (comFA) [Bacillus sp. HBCD-sjtu]
MVAGKQLLLEELSSDLRRELSDLKKKGEIICVQGIIKKASKYICQRCGNIEQRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIHERKGERELHSLQWKGSLSLGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIEEALQKGERVCIAT
PRTDVVLELAPRLQEVFPSINVAALYGGSVDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRRGKQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLHHKKIPRVLLQWLKMYVNKKYPIFL
FVPHVRYIEEIGLLLKGLDHRIDGVHAEDPMRKEKVAEFRKGDIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHYGKTESMVRAKRHIQSMNKSAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=258494 CU648_RS12705 WP_101195070.1 2301427..2302776(-) (comFA) [Bacillus sp. HBCD-sjtu]
ATGGTTGCTGGAAAGCAGTTACTATTAGAAGAACTCTCTTCAGATTTACGGAGAGAATTAAGTGATTTGAAAAAGAAGGG
AGAGATCATATGTGTACAAGGCATAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGGAATATAGAGCAGCGGC
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGGAAGTGTATAACGATGGGAAGAGTTAGT
GAATGTGCTGTACTTGTTCGCGGGATTCATGAAAGAAAAGGAGAAAGGGAATTACATTCGTTACAGTGGAAAGGGAGTTT
GTCTCTTGGTCAGGAGCTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCTTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACAGAAATGTTATTTTACGGTATAGAAGAGGCACTTCAAAAAGGAGAAAGAGTGTGTATCGCAACG
CCAAGGACGGACGTTGTACTGGAATTAGCACCGAGATTACAAGAAGTGTTTCCAAGTATAAATGTAGCTGCTTTATACGG
AGGGAGTGTAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACTCACCAACTGTTACGTTACTATAGAGCGTTTC
ATGTAATGATTGTAGATGAGATTGATGCCTTCCCGTATCATGCGGATCAAATGTTACAGTATGCAGTGCAGCAAGCGATG
AAAGAGAAAGCAGCGCGTATTTATTTAACTGCAACCCCTGATGAAAAGTGGAAGCGCAATTTCAGAAGGGGGAAACAAAA
AGGTATCATTGTCTCTGGACGATATCATCGTCATCCGTTACCAGTTCCTCTATTTAGTTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAAAATTCCTCGTGTGTTACTACAATGGTTAAAAATGTACGTAAACAAAAAATATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAGGCCTGTTATTGAAAGGGTTGGATCATAGAATCGATGGCGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTGGCAGAGTTTAGAAAGGGAGACATTCCGTTATTAGTTACAACGACAATTTTAG
AAAGAGGGGTAACTGTGAAGAACTTACAAGTGGCTGTGTTAGGGGCTGAAGAAGAAATCTTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCGTATGGTGAGGTTGTTTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGTGCGAAAAGACATATTCAAAGTATGAACAAAAGTGCGAAAGAACAAGGATTAATTGATTAA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-408)

• Type III restriction enzyme, res subunit (ResIII) (108-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.632	93.096	0.49