Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CU648_RS07280 Genome accession   NZ_CP025122
Coordinates   1347368..1348162 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus sp. HBCD-sjtu     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1342368..1353162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU648_RS07260 (CU648_07260) - 1344171..1344404 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  CU648_RS07265 (CU648_07265) - 1344453..1345181 (-) 729 WP_086421374.1 glycerophosphodiester phosphodiesterase -
  CU648_RS07270 (CU648_07270) - 1345232..1345378 (+) 147 WP_086421373.1 YycC family protein -
  CU648_RS07275 (CU648_07275) - 1345546..1347072 (-) 1527 WP_086421372.1 glycosyltransferase family 39 protein -
  CU648_RS07280 (CU648_07280) spo0A 1347368..1348162 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  CU648_RS07290 (CU648_07290) spoIVB 1348450..1349748 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  CU648_RS07295 (CU648_07295) recN 1349867..1351606 (-) 1740 WP_101194862.1 DNA repair protein RecN Machinery gene
  CU648_RS07300 (CU648_07300) argR 1351874..1352323 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=258481 CU648_RS07280 WP_003161566.1 1347368..1348162(-) (spo0A) [Bacillus sp. HBCD-sjtu]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=258481 CU648_RS07280 WP_003161566.1 1347368..1348162(-) (spo0A) [Bacillus sp. HBCD-sjtu]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTTATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGTCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCCGAGTTTATTGCAATGGTTGCGGATAAGCTGAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment