Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DN067_RS10100 Genome accession   NZ_CP030083
Coordinates   2132372..2133007 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain Aba     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2127372..2138007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN067_RS10075 - 2127429..2128409 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  DN067_RS10080 kdsB 2128421..2129182 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DN067_RS10085 lpxK 2129192..2130201 (-) 1010 Protein_1953 tetraacyldisaccharide 4'-kinase -
  DN067_RS10090 msbA 2130204..2131931 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  DN067_RS10095 - 2131928..2132356 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  DN067_RS10100 exbB 2132372..2133007 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DN067_RS10105 - 2133057..2133944 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  DN067_RS10110 - 2133941..2134723 (-) 783 WP_000057212.1 ParA family protein -
  DN067_RS10115 rsmG 2134745..2135377 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DN067_RS10120 murU 2135465..2136154 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  DN067_RS10125 - 2136154..2137167 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=258454 DN067_RS10100 WP_000264037.1 2132372..2133007(-) (exbB) [Acinetobacter baumannii strain Aba]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=258454 DN067_RS10100 WP_000264037.1 2132372..2133007(-) (exbB) [Acinetobacter baumannii strain Aba]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393

Multiple sequence alignment