Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DK877_RS06570 Genome accession   NZ_CP030023
Coordinates   1310405..1311070 (+) Length   221 a.a.
NCBI ID   WP_009909826.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2414     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305405..1316070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK877_RS06530 - 1305529..1305666 (+) 138 WP_002935027.1 hypothetical protein -
  DK877_RS06535 (DK877_06755) - 1305679..1306413 (+) 735 WP_002935025.1 TraX family protein -
  DK877_RS06540 (DK877_06760) - 1306512..1306652 (+) 141 WP_002935023.1 hypothetical protein -
  DK877_RS06545 (DK877_06765) - 1306665..1307048 (+) 384 WP_002935021.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  DK877_RS06550 (DK877_06770) - 1307065..1307817 (+) 753 WP_002935019.1 ABC transporter ATP-binding protein -
  DK877_RS06555 (DK877_06775) - 1307818..1309788 (+) 1971 WP_013730363.1 FtsX-like permease family protein -
  DK877_RS06560 (DK877_06780) relB 1309880..1310119 (+) 240 WP_002935014.1 type II toxin-antitoxin system RelB family antitoxin -
  DK877_RS06565 (DK877_06785) - 1310160..1310366 (+) 207 WP_370287028.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DK877_RS06570 (DK877_06790) braR 1310405..1311070 (+) 666 WP_009909826.1 response regulator transcription factor Regulator
  DK877_RS06575 (DK877_06795) - 1311067..1312008 (+) 942 WP_002935009.1 sensor histidine kinase -
  DK877_RS06580 (DK877_06800) - 1312084..1313592 (+) 1509 WP_013730362.1 phosphoglucomutase -
  DK877_RS06585 (DK877_06805) xerS 1313662..1314732 (-) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  DK877_RS06590 (DK877_06810) - 1314899..1315420 (-) 522 WP_002935005.1 AAA family ATPase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25459.28 Da        Isoelectric Point: 4.7792

>NTDB_id=258375 DK877_RS06570 WP_009909826.1 1310405..1311070(+) (braR) [Streptococcus suis strain ISU2414]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSNELEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=258375 DK877_RS06570 WP_009909826.1 1310405..1311070(+) (braR) [Streptococcus suis strain ISU2414]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTCGCTGAAATCAAACCAGACTTGGTGCTGATGGACA
TTAGCCTGCCTTATTACAACGGTTTTTACTGGACGACAGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCTTGCGTCGGGTTAATCAATTCAGCAAATCAACTGATTTGTCAATTGACCAGT
TCCAACTTAGTTTAGACGGGCGATTTTCAAACGAATTGGAACAGGTTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCCTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.273

99.548

0.471