Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PA14_RS09505 Genome accession   NC_008463
Coordinates   2043798..2044127 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa UCBPP-PA14     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038798..2049127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA14_RS29920 (PA14_23450) - 2039196..2040149 (+) 954 WP_003138480.1 UDP-glucose 4-epimerase family protein -
  PA14_RS09495 (PA14_23460) - 2040149..2041165 (+) 1017 WP_003138482.1 MraY family glycosyltransferase -
  PA14_RS09500 (PA14_23470) - 2041610..2043607 (+) 1998 WP_003138484.1 polysaccharide biosynthesis protein -
  PA14_RS09505 (PA14_23480) comEA/comE1 2043798..2044127 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  PA14_RS09515 (PA14_23500) - 2044344..2045540 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  PA14_RS09520 (PA14_23510) uvrB 2045728..2047740 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=25833 PA14_RS09505 WP_003138486.1 2043798..2044127(+) (comEA/comE1) [Pseudomonas aeruginosa UCBPP-PA14]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=25833 PA14_RS09505 WP_003138486.1 2043798..2044127(+) (comEA/comE1) [Pseudomonas aeruginosa UCBPP-PA14]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment