Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BVQ_RS14465 Genome accession   NZ_CP025079
Coordinates   2873939..2874691 (-) Length   250 a.a.
NCBI ID   WP_015417928.1    Uniprot ID   -
Organism   Bacillus velezensis strain QST713     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868939..2879691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVQ_RS14440 (BVQ_14420) mreC 2869375..2870238 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BVQ_RS14445 (BVQ_14425) mreB 2870269..2871282 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BVQ_RS14450 (BVQ_14430) radC 2871374..2872069 (-) 696 WP_007408165.1 RadC family protein -
  BVQ_RS14455 (BVQ_14435) - 2872101..2872670 (-) 570 WP_015417926.1 Maf family protein -
  BVQ_RS14460 (BVQ_14440) - 2872811..2873812 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  BVQ_RS14465 (BVQ_14445) comC 2873939..2874691 (-) 753 WP_015417928.1 prepilin peptidase Machinery gene
  BVQ_RS14470 (BVQ_14450) - 2874831..2876123 (-) 1293 WP_053573156.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  BVQ_RS14475 (BVQ_14455) - 2876182..2878824 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  BVQ_RS14480 (BVQ_14460) - 2879277..2879468 (+) 192 WP_053573155.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27247.99 Da        Isoelectric Point: 9.4293

>NTDB_id=258220 BVQ_RS14465 WP_015417928.1 2873939..2874691(-) (comC) [Bacillus velezensis strain QST713]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=258220 BVQ_RS14465 WP_015417928.1 2873939..2874691(-) (comC) [Bacillus velezensis strain QST713]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment