Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PA14_RS00100 Genome accession   NC_008463
Coordinates   21733..22758 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa UCBPP-PA14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16733..27758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA14_RS00075 (PA14_00160) - 16923..17240 (-) 318 WP_003142202.1 tetratricopeptide repeat protein -
  PA14_RS00080 (PA14_00170) trkA 17389..18762 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  PA14_RS00085 (PA14_00180) rsmB 18789..20093 (-) 1305 WP_003142203.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PA14_RS00090 (PA14_00190) fmt 20090..21034 (-) 945 WP_003142204.1 methionyl-tRNA formyltransferase -
  PA14_RS00095 (PA14_00200) def 21088..21594 (-) 507 WP_003097293.1 peptide deformylase -
  PA14_RS00100 (PA14_00210) tsaP 21733..22758 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PA14_RS00105 (PA14_00230) dprA 22893..23981 (+) 1089 WP_003142205.1 DNA-processing protein DprA Machinery gene
  PA14_RS00110 (PA14_00240) - 24022..24579 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PA14_RS00115 (PA14_00250) - 24589..25566 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PA14_RS00120 (PA14_00280) hemF 25757..26674 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PA14_RS00125 (PA14_00290) aroE 26732..27556 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=25811 PA14_RS00100 WP_003097294.1 21733..22758(+) (tsaP) [Pseudomonas aeruginosa UCBPP-PA14]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=25811 PA14_RS00100 WP_003097294.1 21733..22758(+) (tsaP) [Pseudomonas aeruginosa UCBPP-PA14]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCTATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393