Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECP_RS23500 Genome accession   NC_008253
Coordinates   4834520..4834996 (+) Length   158 a.a.
NCBI ID   WP_001298074.1    Uniprot ID   -
Organism   Escherichia coli 536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4829520..4839996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS23470 (ECP_4626) - 4830190..4831074 (+) 885 WP_000010377.1 GTPase family protein -
  ECP_RS23480 (ECP_4627) - 4831277..4831957 (+) 681 WP_001282919.1 helix-turn-helix transcriptional regulator -
  ECP_RS23485 (ECP_4628) - 4832105..4832782 (+) 678 WP_001097301.1 hypothetical protein -
  ECP_RS26030 - 4832788..4833021 (+) 234 WP_001278290.1 DUF905 family protein -
  ECP_RS23490 (ECP_4629) - 4833111..4833929 (+) 819 WP_001175158.1 DUF932 domain-containing protein -
  ECP_RS23495 (ECP_4630) - 4834020..4834505 (+) 486 WP_000213697.1 antirestriction protein -
  ECP_RS23500 (ECP_4631) radC 4834520..4834996 (+) 477 WP_001298074.1 JAB domain-containing protein Machinery gene
  ECP_RS23505 (ECP_4632) - 4835083..4835304 (+) 222 WP_000692350.1 DUF987 domain-containing protein -
  ECP_RS23510 (ECP_4633) - 4835384..4835752 (+) 369 WP_001285575.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECP_RS23515 (ECP_4634) - 4835842..4836219 (+) 378 WP_001094426.1 TA system toxin CbtA family protein -
  ECP_RS23520 (ECP_4635) - 4836216..4836704 (+) 489 WP_000761683.1 DUF5983 family protein -
  ECP_RS23525 (ECP_4636) - 4836716..4836913 (+) 198 WP_000839272.1 DUF957 domain-containing protein -
  ECP_RS27395 (ECP_4637) - 4836998..4837147 (+) 150 Protein_4501 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.28 Da        Isoelectric Point: 7.2519

>NTDB_id=25808 ECP_RS23500 WP_001298074.1 4834520..4834996(+) (radC) [Escherichia coli 536]
MQQISFLPGEMTPGERSHILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25808 ECP_RS23500 WP_001298074.1 4834520..4834996(+) (radC) [Escherichia coli 536]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCACATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment