Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CWI35_RS17630 Genome accession   NZ_CP025074
Coordinates   3380692..3381294 (-) Length   200 a.a.
NCBI ID   WP_011231652.1    Uniprot ID   A0A7U9ESV4
Organism   [Bacillus] caldolyticus strain NEB414     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3375692..3386294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI35_RS17615 (CWI35_17585) - 3376388..3377089 (+) 702 WP_011231655.1 DnaD domain-containing protein -
  CWI35_RS17620 (CWI35_17590) nth 3377193..3377864 (+) 672 WP_011231654.1 endonuclease III -
  CWI35_RS17625 (CWI35_17595) - 3377968..3380658 (-) 2691 WP_119877963.1 penicillin-binding protein 1A -
  CWI35_RS17630 (CWI35_17600) recU 3380692..3381294 (-) 603 WP_011231652.1 Holliday junction resolvase RecU Machinery gene
  CWI35_RS17635 (CWI35_17605) - 3381519..3381761 (+) 243 WP_013144928.1 hypothetical protein -
  CWI35_RS17640 (CWI35_17610) - 3381878..3382261 (+) 384 WP_015375251.1 YppE family protein -
  CWI35_RS18365 - 3382343..3382513 (-) 171 WP_013144930.1 hypothetical protein -
  CWI35_RS17645 (CWI35_17615) - 3382633..3382833 (-) 201 WP_011231648.1 YppF family protein -
  CWI35_RS17650 (CWI35_17620) - 3383119..3383466 (+) 348 WP_011231647.1 YppG family protein -
  CWI35_RS17655 (CWI35_17625) - 3383550..3383804 (-) 255 WP_011231646.1 sigma-G-dependent sporulation-specific acid-soluble spore protein CsgA -
  CWI35_RS17660 (CWI35_17630) - 3383804..3383989 (-) 186 WP_011231645.1 hypothetical protein -
  CWI35_RS18370 - 3384073..3384234 (+) 162 WP_162924033.1 hypothetical protein -
  CWI35_RS17665 (CWI35_17635) - 3384350..3384814 (-) 465 WP_119877964.1 Hsp20/alpha crystallin family protein -
  CWI35_RS18730 - 3385045..3385167 (+) 123 WP_011231643.1 hypothetical protein -
  CWI35_RS17670 (CWI35_17640) - 3385335..3386009 (+) 675 WP_011231642.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23034.15 Da        Isoelectric Point: 9.9021

>NTDB_id=258053 CWI35_RS17630 WP_011231652.1 3380692..3381294(-) (recU) [[Bacillus] caldolyticus strain NEB414]
MALKYPSGKEYRGNKPNAARRPAADYANRGMTLEDDLNATNEYYRERGIAVIHKKPTPVQIVRVDYPKRSAAVITEAYFR
QASTTDYNGVYRGKYIDFEAKETKNKTAFPLKNFHAHQIRHMEQVVAHGGICFAILRFSLLNETYLLDASHLIAWWNKQE
AGGRKSIPKQEIERHGHSIPLGYQPRIDYISVVDNVYFTR

Nucleotide


Download         Length: 603 bp        

>NTDB_id=258053 CWI35_RS17630 WP_011231652.1 3380692..3381294(-) (recU) [[Bacillus] caldolyticus strain NEB414]
ATGGCACTCAAATACCCGAGCGGAAAAGAGTATCGCGGAAACAAGCCGAACGCCGCGCGCCGGCCGGCGGCCGATTATGC
CAATCGCGGCATGACGCTCGAAGACGACTTAAACGCGACGAATGAATATTACCGGGAACGCGGCATCGCGGTCATCCATA
AAAAGCCGACCCCGGTGCAAATCGTGCGCGTCGACTATCCGAAACGGAGCGCCGCCGTCATTACCGAAGCCTACTTCCGG
CAAGCGTCGACGACCGACTACAACGGTGTGTACCGCGGCAAGTACATTGACTTTGAGGCGAAAGAGACAAAAAACAAAAC
GGCGTTTCCGCTGAAAAATTTCCACGCTCATCAAATCCGCCATATGGAGCAAGTCGTCGCCCACGGCGGCATTTGTTTTG
CGATTTTGCGTTTTTCTTTGCTCAATGAAACGTATTTGCTTGACGCCTCTCATTTGATCGCTTGGTGGAACAAACAGGAA
GCCGGCGGACGAAAGTCGATTCCGAAACAAGAGATCGAACGGCATGGACATTCCATTCCGCTTGGCTACCAGCCGAGAAT
TGATTATATTAGTGTAGTAGACAACGTGTACTTCACCCGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(29-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U9ESV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

60.199

100

0.605

Multiple sequence alignment