Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CWI35_RS10365 Genome accession   NZ_CP025074
Coordinates   1982760..1983059 (+) Length   99 a.a.
NCBI ID   WP_011229546.1    Uniprot ID   L7ZV79
Organism   [Bacillus] caldolyticus strain NEB414     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1977760..1988059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI35_RS10350 (CWI35_10330) - 1978098..1979303 (-) 1206 WP_015373700.1 G5 and 3D domain-containing protein -
  CWI35_RS10355 (CWI35_10335) - 1979504..1980274 (-) 771 WP_011229548.1 TatD family hydrolase -
  CWI35_RS10360 (CWI35_10340) metG 1980411..1982363 (-) 1953 WP_015373699.1 methionine--tRNA ligase -
  CWI35_RS10365 (CWI35_10345) abrB 1982760..1983059 (+) 300 WP_011229546.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CWI35_RS10370 (CWI35_10350) rsmI 1983076..1983987 (-) 912 WP_011229545.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CWI35_RS10375 (CWI35_10355) - 1984003..1984752 (-) 750 WP_012820433.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CWI35_RS10380 (CWI35_10360) yabA 1984813..1985130 (-) 318 WP_042381767.1 DNA replication initiation control protein YabA -
  CWI35_RS10385 (CWI35_10365) - 1985191..1986018 (-) 828 WP_011229542.1 stage 0 sporulation family protein -
  CWI35_RS10390 (CWI35_10370) holB 1986033..1987025 (-) 993 WP_014194561.1 DNA polymerase III subunit delta' -
  CWI35_RS10395 (CWI35_10375) tmk 1987105..1987737 (-) 633 WP_014194560.1 dTMP kinase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11223.95 Da        Isoelectric Point: 4.7783

>NTDB_id=258025 CWI35_RS10365 WP_011229546.1 1982760..1983059(+) (abrB) [[Bacillus] caldolyticus strain NEB414]
MKSTGIVRKVDELGRVVIPIELRRTLDINEKDALEIYVDDDRIILKKYKPNMTCVVTGEVSDDNFKLAGGKIILSREGAE
ILLQEIQQHLEAATDKEKE

Nucleotide


Download         Length: 300 bp        

>NTDB_id=258025 CWI35_RS10365 WP_011229546.1 1982760..1983059(+) (abrB) [[Bacillus] caldolyticus strain NEB414]
ATGAAATCGACAGGGATCGTGCGTAAAGTCGATGAGTTAGGCCGCGTCGTCATTCCAATTGAGCTGCGACGTACGTTGGA
TATTAACGAAAAAGATGCGTTGGAAATTTATGTTGACGATGACCGCATCATTTTGAAAAAGTATAAGCCGAACATGACGT
GTGTCGTCACCGGCGAAGTGTCGGACGACAACTTCAAACTGGCCGGCGGCAAAATCATTTTAAGCCGCGAAGGCGCGGAA
ATTTTGCTGCAGGAGATCCAACAGCATCTAGAAGCAGCAACAGACAAAGAAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L7ZV79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

82.418

91.919

0.758

Multiple sequence alignment