Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   A7J09_RS08395 Genome accession   NZ_CP030015
Coordinates   1739982..1741064 (-) Length   360 a.a.
NCBI ID   WP_029178838.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1734982..1746064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS08380 (A7J09_08545) - 1735950..1737101 (+) 1152 WP_024382206.1 ROK family transcriptional regulator -
  A7J09_RS08385 (A7J09_08550) - 1737549..1738613 (+) 1065 Protein_1627 IS110 family transposase -
  A7J09_RS08390 (A7J09_08555) - 1738737..1739992 (+) 1256 WP_172411187.1 ISL3 family transposase -
  A7J09_RS08395 (A7J09_08560) sepM 1739982..1741064 (-) 1083 WP_029178838.1 SepM family pheromone-processing serine protease Regulator
  A7J09_RS08400 (A7J09_08565) coaD 1741051..1741539 (-) 489 WP_029178839.1 pantetheine-phosphate adenylyltransferase -
  A7J09_RS08405 (A7J09_08570) rsmD 1741529..1742068 (-) 540 WP_029178840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  A7J09_RS08410 (A7J09_08575) - 1742378..1743094 (-) 717 WP_029178841.1 hypothetical protein -
  A7J09_RS08415 (A7J09_08580) - 1743151..1743537 (-) 387 WP_029178842.1 rhodanese-like domain-containing protein -
  A7J09_RS08420 (A7J09_08585) - 1743537..1743755 (-) 219 WP_029178843.1 YqgQ family protein -
  A7J09_RS08425 (A7J09_08590) - 1743980..1745258 (-) 1279 Protein_1635 IS4 family transposase -
  A7J09_RS08430 (A7J09_08595) - 1745364..1745966 (-) 603 WP_029178698.1 response regulator transcription factor -

Sequence


Protein


Download         Length: 360 a.a.        Molecular weight: 38831.05 Da        Isoelectric Point: 4.7301

>NTDB_id=257985 A7J09_RS08395 WP_029178838.1 1739982..1741064(-) (sepM) [Streptococcus suis strain ISU2812]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIAQFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALADDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLELGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTGSLSTVVGRRKANT

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=257985 A7J09_RS08395 WP_029178838.1 1739982..1741064(-) (sepM) [Streptococcus suis strain ISU2812]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATTTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAAGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAAGAGTATTTTCGTATAGCACAGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTAGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTACTTGCCCTGGCGGATGATTCGACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATAAAATATGTGAGTGGCTTGGAACTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGATGGAAAAATTATCAAATTGTCTAATGGCAAAAATGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAACCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAGG
CTCTTTGTCAACTGTAGTGGGTAGACGAAAAGCTAACACCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

61.383

96.389

0.592