Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   A7J09_RS08250 Genome accession   NZ_CP030015
Coordinates   1707029..1707832 (-) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702029..1712832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS08235 (A7J09_08390) pbp2b 1702230..1704305 (-) 2076 WP_029178533.1 penicillin-binding protein PBP2B -
  A7J09_RS08240 (A7J09_08395) - 1704397..1704852 (-) 456 WP_029178534.1 ATP-binding cassette domain-containing protein -
  A7J09_RS08245 (A7J09_08400) - 1705091..1706293 (+) 1203 WP_148124345.1 IS110 family transposase -
  A7J09_RS08250 (A7J09_08410) vicX 1707029..1707832 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  A7J09_RS08255 (A7J09_08415) micB 1707839..1709188 (-) 1350 WP_029178656.1 cell wall metabolism sensor histidine kinase VicK Regulator
  A7J09_RS08260 (A7J09_08420) yycF 1709181..1709885 (-) 705 WP_029178655.1 response regulator YycF -
  A7J09_RS08265 (A7J09_08425) - 1710079..1710840 (+) 762 WP_029178654.1 amino acid ABC transporter ATP-binding protein -
  A7J09_RS08270 (A7J09_08430) - 1710851..1711690 (+) 840 WP_029178653.1 transporter substrate-binding domain-containing protein -
  A7J09_RS08275 (A7J09_08435) - 1711705..1712403 (+) 699 WP_029174867.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=257981 A7J09_RS08250 WP_002935843.1 1707029..1707832(-) (vicX) [Streptococcus suis strain ISU2812]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=257981 A7J09_RS08250 WP_002935843.1 1707029..1707832(-) (vicX) [Streptococcus suis strain ISU2812]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGGATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTTGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGCCATGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGTCATCTTTGTAATGAAGATGGAGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment