Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   A7J09_RS04250 Genome accession   NZ_CP030015
Coordinates   881550..883211 (+) Length   553 a.a.
NCBI ID   WP_029174766.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 876550..888211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS04220 (A7J09_04300) - 876836..877744 (-) 909 WP_029178827.1 neutral zinc metallopeptidase -
  A7J09_RS04225 (A7J09_04305) xseA 877910..879253 (+) 1344 WP_014637117.1 exodeoxyribonuclease VII large subunit -
  A7J09_RS04230 (A7J09_04310) - 879228..879443 (+) 216 WP_014637116.1 exodeoxyribonuclease VII small subunit -
  A7J09_RS04235 (A7J09_04315) - 879443..880315 (+) 873 WP_014637115.1 polyprenyl synthetase family protein -
  A7J09_RS04240 (A7J09_04320) - 880308..881129 (+) 822 WP_029178828.1 TlyA family RNA methyltransferase -
  A7J09_RS04245 (A7J09_04325) - 881122..881547 (+) 426 WP_002942941.1 arginine repressor -
  A7J09_RS04250 (A7J09_04330) recN 881550..883211 (+) 1662 WP_029174766.1 DNA repair protein RecN Machinery gene
  A7J09_RS04255 (A7J09_04335) - 883305..884138 (+) 834 WP_002936253.1 DegV family protein -
  A7J09_RS04260 (A7J09_04340) - 884131..884964 (+) 834 WP_029174767.1 SGNH/GDSL hydrolase family protein -
  A7J09_RS04265 (A7J09_04345) - 884936..885532 (+) 597 WP_029174768.1 YpmS family protein -
  A7J09_RS04270 (A7J09_04350) - 885622..885897 (+) 276 WP_029174769.1 HU family DNA-binding protein -
  A7J09_RS04275 (A7J09_04360) - 886351..886818 (+) 468 WP_024376715.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62743.93 Da        Isoelectric Point: 4.6542

>NTDB_id=257958 A7J09_RS04250 WP_029174766.1 881550..883211(+) (recN) [Streptococcus suis strain ISU2812]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELALVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=257958 A7J09_RS04250 WP_029174766.1 881550..883211(+) (recN) [Streptococcus suis strain ISU2812]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATCGACGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAGTCCCAACACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCTTACCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCAATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGTCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGATAATCTAGACT
TTGACGGCAATCGTCTCTTGCAATTAGAAAGTCGCCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTC
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAACCACTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45