Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   A7J09_RS00210 Genome accession   NZ_CP030015
Coordinates   28998..29780 (+) Length   260 a.a.
NCBI ID   WP_029178883.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23998..34780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS00185 (A7J09_00185) mreC 24008..24844 (+) 837 WP_029178885.1 rod shape-determining protein MreC -
  A7J09_RS00190 (A7J09_00190) mreD 24861..25349 (+) 489 WP_228381584.1 rod shape-determining protein MreD -
  A7J09_RS00195 (A7J09_00195) pcsB 25434..26675 (+) 1242 WP_024419580.1 peptidoglycan hydrolase PcsB -
  A7J09_RS00200 (A7J09_00200) - 26778..27746 (+) 969 WP_053861668.1 ribose-phosphate diphosphokinase -
  A7J09_RS00205 (A7J09_00205) - 27833..29011 (+) 1179 WP_029178884.1 pyridoxal phosphate-dependent aminotransferase -
  A7J09_RS00210 (A7J09_00210) recO 28998..29780 (+) 783 WP_029178883.1 DNA repair protein RecO Machinery gene
  A7J09_RS00215 (A7J09_00215) plsX 29777..30784 (+) 1008 WP_029178882.1 phosphate acyltransferase PlsX -
  A7J09_RS00220 (A7J09_00220) - 30777..31025 (+) 249 WP_029178881.1 phosphopantetheine-binding protein -
  A7J09_RS00225 (A7J09_00225) purC 31143..31850 (+) 708 WP_029178880.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30414.90 Da        Isoelectric Point: 5.2146

>NTDB_id=257925 A7J09_RS00210 WP_029178883.1 28998..29780(+) (recO) [Streptococcus suis strain ISU2812]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKFRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKA
INADIFKLSYATYILALADAALQDKVYDPALFSFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGVSLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPGTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=257925 A7J09_RS00210 WP_029178883.1 28998..29780(+) (recO) [Streptococcus suis strain ISU2812]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTCGAGAAGATGATAAGCTGGTCAAGATTTTTAC
AGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTTCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTCAAAATCAATGATGATGGGCTGTCTTATATTGAGGATTTTCATCAAGTCCAGCCTTTTAAGGCG
ATCAATGCTGATATTTTCAAACTCAGCTATGCGACCTATATCTTGGCCTTGGCAGATGCGGCCTTGCAGGATAAGGTTTA
TGATCCAGCTCTCTTTTCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCGGGTTTGGATTATGAAGTCTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGACGTTTTGGGGTCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGTCTG
CCTTTTGATTATTCTTACAAGTATAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATTTGGA
CCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAGGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.127

96.538

0.658

Multiple sequence alignment