Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B4O06_RS24835 Genome accession   NZ_CP029981
Coordinates   4513849..4514325 (-) Length   158 a.a.
NCBI ID   WP_032328266.1    Uniprot ID   -
Organism   Escherichia coli strain 99-3165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4508849..4519325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4O06_RS24790 - 4509513..4509896 (-) 384 Protein_4353 Arm DNA-binding domain-containing protein -
  B4O06_RS24795 - 4510342..4510668 (-) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  B4O06_RS24800 - 4510665..4510928 (-) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  B4O06_RS24805 - 4511000..4511866 (-) 867 WP_001280426.1 DUF4942 domain-containing protein -
  B4O06_RS24810 - 4511951..4512148 (-) 198 WP_000839291.1 DUF957 domain-containing protein -
  B4O06_RS24815 - 4512160..4512648 (-) 489 WP_032328344.1 DUF5983 family protein -
  B4O06_RS24820 - 4512645..4513022 (-) 378 WP_000854727.1 TA system toxin CbtA family protein -
  B4O06_RS24825 - 4513111..4513479 (-) 369 WP_024183700.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B4O06_RS24830 - 4513559..4513780 (-) 222 WP_000692295.1 DUF987 domain-containing protein -
  B4O06_RS24835 radC 4513849..4514325 (-) 477 WP_032328266.1 RadC family protein Machinery gene
  B4O06_RS24840 - 4514340..4514825 (-) 486 WP_000206660.1 antirestriction protein -
  B4O06_RS24845 - 4514917..4515735 (-) 819 WP_001234693.1 DUF932 domain-containing protein -
  B4O06_RS24855 - 4515834..4516067 (-) 234 WP_001278281.1 DUF905 family protein -
  B4O06_RS27350 - 4516073..4516750 (-) 678 Protein_4366 hypothetical protein -
  B4O06_RS24865 - 4516869..4517753 (-) 885 WP_000010388.1 GTPase -
  B4O06_RS24870 - 4517860..4518792 (+) 933 WP_021538213.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17662.29 Da        Isoelectric Point: 7.2020

>NTDB_id=257917 B4O06_RS24835 WP_032328266.1 4513849..4514325(-) (radC) [Escherichia coli strain 99-3165]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILSMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=257917 B4O06_RS24835 WP_032328266.1 4513849..4514325(-) (radC) [Escherichia coli strain 99-3165]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAGCATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.637

71.519

0.405