Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   B4O06_RS20850 Genome accession   NZ_CP029981
Coordinates   3758974..3759579 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 99-3165     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3753974..3764579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4O06_RS20825 aes 3754011..3754970 (+) 960 WP_000801850.1 acetyl esterase -
  B4O06_RS20830 hemH 3754967..3755929 (-) 963 WP_001250088.1 ferrochelatase -
  B4O06_RS20835 adk 3756165..3756809 (-) 645 WP_001220233.1 adenylate kinase -
  B4O06_RS20845 htpG 3756990..3758864 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  B4O06_RS20850 recR 3758974..3759579 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  B4O06_RS20855 ybaB 3759579..3759908 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  B4O06_RS20860 dnaX 3759961..3761892 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  B4O06_RS20865 apt 3762021..3762572 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  B4O06_RS20875 ybaN 3762725..3763102 (-) 378 WP_001188905.1 DUF454 family protein -
  B4O06_RS20880 priC 3763172..3763699 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  B4O06_RS20885 rsmS 3763713..3763874 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=257907 B4O06_RS20850 WP_001195025.1 3758974..3759579(-) (recR) [Escherichia coli strain 99-3165]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=257907 B4O06_RS20850 WP_001195025.1 3758974..3759579(-) (recR) [Escherichia coli strain 99-3165]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443