Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B4O06_RS12355 Genome accession   NZ_CP029981
Coordinates   2191098..2191574 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 99-3165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2186098..2196574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4O06_RS12305 sbmC 2186591..2187064 (+) 474 WP_001394439.1 DNA gyrase inhibitor SbmC -
  B4O06_RS12310 yeeA 2187262..2188320 (+) 1059 WP_001200905.1 FUSC family protein -
  B4O06_RS12315 tmaR 2188492..2188821 (+) 330 WP_000450409.1 DUF496 family protein -
  B4O06_RS12320 - 2188922..2189104 (-) 183 WP_024169664.1 EutP/PduV family microcompartment system protein -
  B4O06_RS12325 - 2189158..2189304 (+) 147 Protein_2069 transposase domain-containing protein -
  B4O06_RS12330 - 2189593..2189673 (-) 81 Protein_2070 hypothetical protein -
  B4O06_RS12335 yeeW 2189719..2189913 (-) 195 WP_032328122.1 DUF5983 family protein -
  B4O06_RS12340 - 2189975..2190283 (-) 309 Protein_2072 TA system toxin CbtA family protein -
  B4O06_RS12345 cbeA 2190372..2190740 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  B4O06_RS12350 yeeT 2190814..2191035 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  B4O06_RS12355 radC 2191098..2191574 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  B4O06_RS12360 - 2191590..2192069 (-) 480 WP_000860076.1 antirestriction protein -
  B4O06_RS12365 - 2192151..2192972 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  B4O06_RS27215 - 2193193..2193270 (-) 78 Protein_2078 hypothetical protein -
  B4O06_RS27220 - 2193262..2193450 (+) 189 Protein_2079 IS4 family transposase -
  B4O06_RS27225 - 2193447..2193620 (+) 174 Protein_2080 cobalamin biosynthesis protein -
  B4O06_RS12385 cobU 2193754..2194300 (+) 547 Protein_2081 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  B4O06_RS12390 cobS 2194297..2195040 (+) 744 WP_001355648.1 adenosylcobinamide-GDP ribazoletransferase -
  B4O06_RS12395 cobT 2195052..2196131 (+) 1080 WP_001193822.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=257889 B4O06_RS12355 WP_001186773.1 2191098..2191574(-) (radC) [Escherichia coli strain 99-3165]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=257889 B4O06_RS12355 WP_001186773.1 2191098..2191574(-) (radC) [Escherichia coli strain 99-3165]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment