Detailed information NTG0257875

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: B4O06_RS08385
• Genome accession: NZ_CP029981
• Coordinates: 1405523..1406515 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 99-3165
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1400523..1411515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B4O06_RS08355	ispD	1400584..1401294 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
B4O06_RS08360	ispF	1401294..1401773 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
B4O06_RS08365	truD	1401770..1402819 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
B4O06_RS08370	surE	1402800..1403561 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
B4O06_RS08375	pcm	1403555..1404181 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
B4O06_RS08380	nlpD	1404366..1405460 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
B4O06_RS08385	rpoS	1405523..1406515 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
B4O06_RS08390	-	1406609..1407421 (-)	813	Protein_1336	transporter	-
B4O06_RS08400	-	1408181..1408748 (-)	568	Protein_1338	SLC13 family permease	-
B4O06_RS08405	ygbM	1408837..1409613 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
B4O06_RS08410	ygbL	1409618..1410256 (-)	639	WP_001278994.1	aldolase	-
B4O06_RS08415	otnK	1410253..1411515 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=257875 B4O06_RS08385 WP_000081550.1 1405523..1406515(+) (rpoS) [Escherichia coli strain 99-3165]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=257875 B4O06_RS08385 WP_000081550.1 1405523..1406515(+) (rpoS) [Escherichia coli strain 99-3165]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715