Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECP_RS19030 Genome accession   NC_008253
Coordinates   3916361..3917029 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli 536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3911361..3922029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS19000 (ECP_3730) rfaQ 3911539..3912597 (-) 1059 WP_000360397.1 lipopolysaccharide core heptosyltransferase RfaQ -
  ECP_RS19005 (ECP_3731) waaA 3913010..3914287 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  ECP_RS19010 (ECP_3732) coaD 3914295..3914774 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  ECP_RS19015 (ECP_3733) mutM 3914813..3915622 (-) 810 WP_001114446.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  ECP_RS19020 (ECP_3734) rpmG 3915720..3915887 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  ECP_RS19025 (ECP_3735) rpmB 3915908..3916144 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  ECP_RS19030 (ECP_3736) radC 3916361..3917029 (-) 669 WP_001297375.1 RadC family protein Machinery gene
  ECP_RS19035 (ECP_3737) coaBC 3917201..3918421 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  ECP_RS19040 (ECP_3738) dut 3918399..3918857 (+) 459 WP_000976070.1 dUTP diphosphatase -
  ECP_RS19045 (ECP_3739) slmA 3918964..3919560 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  ECP_RS19050 (ECP_3740) pyrE 3919597..3920238 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  ECP_RS19055 (ECP_3741) rph 3920304..3921020 (-) 717 WP_001247094.1 ribonuclease PH -
  ECP_RS19060 (ECP_3742) yicC 3921147..3922010 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=25782 ECP_RS19030 WP_001297375.1 3916361..3917029(-) (radC) [Escherichia coli 536]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=25782 ECP_RS19030 WP_001297375.1 3916361..3917029(-) (radC) [Escherichia coli 536]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GTTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGAG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment