Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DNQ41_RS14830 Genome accession   NZ_CP029973
Coordinates   2889200..2890627 (+) Length   475 a.a.
NCBI ID   WP_000980605.1    Uniprot ID   -
Organism   Escherichia coli strain 51008369SK1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2884200..2895627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNQ41_RS27875 (DNQ41_14795) - 2884350..2884739 (+) 390 WP_077875581.1 transposase -
  DNQ41_RS28600 (DNQ41_14805) - 2885193..2885375 (+) 183 WP_024198358.1 EutP/PduV family microcompartment system protein -
  DNQ41_RS14810 (DNQ41_14810) tmaR 2885476..2885805 (-) 330 WP_000450409.1 DUF496 family protein -
  DNQ41_RS14815 (DNQ41_14815) yeeA 2885977..2887035 (-) 1059 WP_001200895.1 FUSC family protein -
  DNQ41_RS14820 (DNQ41_14820) sbmC 2887233..2887706 (-) 474 WP_001105407.1 DNA gyrase inhibitor SbmC -
  DNQ41_RS14825 (DNQ41_14825) dacD 2887825..2888991 (-) 1167 WP_024198359.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  DNQ41_RS14830 (DNQ41_14830) sbcB 2889200..2890627 (+) 1428 WP_000980605.1 exodeoxyribonuclease I Machinery gene
  DNQ41_RS14835 (DNQ41_14835) tsuB 2890670..2890897 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DNQ41_RS14840 (DNQ41_14840) tsuA 2890911..2891969 (-) 1059 WP_087523589.1 thiosulfate utilization transporter TsuA/YeeE -
  DNQ41_RS14845 (DNQ41_14845) plaP 2892148..2893506 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DNQ41_RS14850 (DNQ41_14850) yoeI 2893496..2893558 (-) 63 WP_010723108.1 membrane protein YoeI -
  DNQ41_RS14855 (DNQ41_14855) yeeY 2893773..2894702 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  DNQ41_RS14860 (DNQ41_14860) yeeZ 2894748..2895572 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.69 Da        Isoelectric Point: 5.3480

>NTDB_id=257802 DNQ41_RS14830 WP_000980605.1 2889200..2890627(+) (sbcB) [Escherichia coli strain 51008369SK1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
NRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=257802 DNQ41_RS14830 WP_000980605.1 2889200..2890627(+) (sbcB) [Escherichia coli strain 51008369SK1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
AACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment