Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CWI24_RS10635 Genome accession   NZ_CP025050
Coordinates   2205815..2206450 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PB368     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2200815..2211450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI24_RS10620 (CWI24_10620) - 2201524..2202768 (+) 1245 WP_019485501.1 lipoprotein-releasing ABC transporter permease subunit -
  CWI24_RS10625 (CWI24_10625) - 2202853..2203386 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  CWI24_RS10630 (CWI24_10630) comA 2203517..2205742 (+) 2226 WP_023085388.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CWI24_RS10635 (CWI24_10635) exbB 2205815..2206450 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CWI24_RS10640 (CWI24_10640) - 2206447..2206887 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  CWI24_RS10645 (CWI24_10645) lpxK 2206887..2207885 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  CWI24_RS10650 (CWI24_10650) - 2207923..2208108 (+) 186 WP_003091157.1 Trm112 family protein -
  CWI24_RS10655 (CWI24_10655) kdsB 2208108..2208872 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CWI24_RS10660 (CWI24_10660) - 2208872..2209336 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  CWI24_RS10665 (CWI24_10665) murB 2209333..2210352 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=257736 CWI24_RS10635 WP_003091163.1 2205815..2206450(+) (exbB) [Pseudomonas aeruginosa strain PB368]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=257736 CWI24_RS10635 WP_003091163.1 2205815..2206450(+) (exbB) [Pseudomonas aeruginosa strain PB368]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTTGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment