Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECP_RS15375 Genome accession   NC_008253
Coordinates   3173460..3173936 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli 536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3168460..3178936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS15355 (ECP_3009) - 3168808..3171654 (+) 2847 WP_000820518.1 Ag43/Cah family autotransporter adhesin -
  ECP_RS15360 (ECP_3010) - 3171725..3171958 (+) 234 WP_001117568.1 DUF905 family protein -
  ECP_RS15365 (ECP_3011) - 3172049..3172867 (+) 819 WP_001234750.1 DUF932 domain-containing protein -
  ECP_RS15370 (ECP_3012) - 3172959..3173444 (+) 486 WP_000214415.1 antirestriction protein -
  ECP_RS15375 (ECP_3013) radC 3173460..3173936 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  ECP_RS15380 (ECP_3014) - 3174005..3174226 (+) 222 WP_000692346.1 DUF987 domain-containing protein -
  ECP_RS15385 (ECP_3015) - 3174300..3174668 (+) 369 WP_024174331.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECP_RS15390 (ECP_3016) - 3174758..3175135 (+) 378 WP_001094445.1 TA system toxin CbtA family protein -
  ECP_RS15395 (ECP_3017) - 3175132..3175620 (+) 489 WP_000761718.1 DUF5983 family protein -
  ECP_RS15400 (ECP_3018) - 3175632..3175829 (+) 198 WP_000838536.1 DUF957 domain-containing protein -
  ECP_RS15405 (ECP_3019) - 3175914..3176756 (+) 843 WP_001280500.1 DUF4942 domain-containing protein -
  ECP_RS15410 - 3177099..3177269 (+) 171 Protein_2960 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=25765 ECP_RS15375 WP_001186725.1 3173460..3173936(+) (radC) [Escherichia coli 536]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25765 ECP_RS15375 WP_001186725.1 3173460..3173936(+) (radC) [Escherichia coli 536]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment