Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CWI26_RS11065 Genome accession   NZ_CP025043
Coordinates   2240941..2242308 (-) Length   455 a.a.
NCBI ID   WP_100881790.1    Uniprot ID   A0A2I5KRJ7
Organism   Streptococcus suis strain AH681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235941..2247308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS11030 (CWI26_11030) - 2236072..2236935 (-) 864 WP_024377981.1 class C sortase -
  CWI26_RS11035 (CWI26_11035) - 2236932..2237789 (-) 858 WP_100881789.1 class C sortase -
  CWI26_RS11040 (CWI26_11040) - 2237767..2238678 (-) 912 WP_029176506.1 class C sortase -
  CWI26_RS12505 (CWI26_11045) - 2238777..2238932 (-) 156 Protein_2060 IS982 family transposase -
  CWI26_RS11055 (CWI26_11055) - 2239358..2240116 (-) 759 WP_013730631.1 TIGR00266 family protein -
  CWI26_RS11060 (CWI26_11060) - 2240325..2240819 (-) 495 WP_099875925.1 beta-class carbonic anhydrase -
  CWI26_RS11065 (CWI26_11065) radA 2240941..2242308 (-) 1368 WP_100881790.1 DNA repair protein RadA Machinery gene
  CWI26_RS11070 (CWI26_11070) - 2242315..2242848 (-) 534 WP_029184896.1 histidine phosphatase family protein -
  CWI26_RS11075 (CWI26_11075) - 2242855..2243298 (-) 444 WP_029179472.1 dUTP diphosphatase -
  CWI26_RS11080 (CWI26_11080) - 2243529..2243888 (-) 360 WP_024397964.1 YbaN family protein -
  CWI26_RS11085 (CWI26_11085) - 2244015..2244617 (+) 603 WP_015647489.1 NADPH-dependent FMN reductase -
  CWI26_RS11090 (CWI26_11090) - 2244632..2245867 (+) 1236 WP_100881791.1 NAD(P)H-dependent oxidoreductase -
  CWI26_RS11095 (CWI26_11095) - 2245948..2246742 (+) 795 WP_024376123.1 formate/nitrite transporter family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49873.35 Da        Isoelectric Point: 6.1911

>NTDB_id=257631 CWI26_RS11065 WP_100881790.1 2240941..2242308(-) (radA) [Streptococcus suis strain AH681]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFQ

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=257631 CWI26_RS11065 WP_100881790.1 2240941..2242308(-) (radA) [Streptococcus suis strain AH681]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCTAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTTAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGTACCAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGTGGCGTGGTGCCGGGAAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAGTCCACCCTGCT
CTTGCAAGTATCCACCCAGCTGTCCACCATCGGTACCGTCCTCTACGTGTCGGGGGAGGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCGGACATCTCCAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACTAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTAGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGTTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CGATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAATTGGATGAACCAGCTATTGACCTGGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACTAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAACTAGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGAATCAAGGTACCAAAGGAAATCACTGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TTCAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I5KRJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment