Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   CWI26_RS09145 Genome accession   NZ_CP025043
Coordinates   1850086..1851861 (-) Length   591 a.a.
NCBI ID   WP_029185197.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1845086..1856861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS09125 (CWI26_09125) - 1845478..1847277 (+) 1800 WP_100881640.1 acyltransferase family protein -
  CWI26_RS09130 (CWI26_09130) - 1847485..1848138 (-) 654 WP_024398415.1 phosphatase PAP2 family protein -
  CWI26_RS09135 (CWI26_09135) - 1848163..1848720 (-) 558 WP_024375839.1 ECF transporter S component -
  CWI26_RS09140 (CWI26_09140) - 1849166..1849711 (-) 546 WP_024378130.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  CWI26_RS09145 (CWI26_09145) oppA 1850086..1851861 (-) 1776 WP_029185197.1 oligopeptide ABC transporter substrate-binding protein Regulator
  CWI26_RS09150 (CWI26_09150) yidD 1852460..1852699 (-) 240 WP_024375837.1 membrane protein insertion efficiency factor YidD -
  CWI26_RS09155 (CWI26_09155) - 1852699..1853430 (-) 732 WP_029185420.1 pseudouridine synthase -
  CWI26_RS09160 (CWI26_09160) scpB 1853420..1853989 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  CWI26_RS09165 (CWI26_09165) - 1853973..1854692 (-) 720 WP_024378618.1 segregation/condensation protein A -
  CWI26_RS09170 (CWI26_09170) xerD 1854692..1855423 (-) 732 WP_024375834.1 site-specific tyrosine recombinase XerD -
  CWI26_RS09175 (CWI26_09175) cbpB 1855420..1855878 (-) 459 WP_024378617.1 cyclic-di-AMP-binding protein CbpB -
  CWI26_RS09180 (CWI26_09180) - 1855875..1856402 (-) 528 WP_024378616.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65422.09 Da        Isoelectric Point: 4.2580

>NTDB_id=257623 CWI26_RS09145 WP_029185197.1 1850086..1851861(-) (oppA) [Streptococcus suis strain AH681]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFNSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVRKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTDPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTVLLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=257623 CWI26_RS09145 WP_029185197.1 1850086..1851861(-) (oppA) [Streptococcus suis strain AH681]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGCCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGATGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAGGAAGGTTGATGATTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCGATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATAACCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TTTATACAGGAAGAACAATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCGGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGTACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAGCAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.825

100

0.662

Multiple sequence alignment