Detailed information NTG0025761

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECP_RS13920
• Genome accession: NC_008253
• Coordinates: 2861460..2862452 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli 536
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2856460..2867452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECP_RS13900 (ECP_2717)	ygbM	2857090..2857866 (+)	777	WP_001136928.1	HPr family phosphocarrier protein	-
ECP_RS13905	ygbN	2857955..2859320 (+)	1366	Protein_2666	GntP family transporter	-
ECP_RS13910 (ECP_2720)	-	2859463..2860506 (-)	1044	WP_001161579.1	MBL fold metallo-hydrolase	-
ECP_RS13915 (ECP_2721)	-	2860731..2861282 (+)	552	WP_001179442.1	flavodoxin family protein	-
ECP_RS13920 (ECP_2722)	rpoS	2861460..2862452 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECP_RS13925 (ECP_2723)	nlpD	2862515..2863609 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECP_RS13930	pcm	2863794..2864420 (-)	627	Protein_2671	protein-L-isoaspartate O-methyltransferase	-
ECP_RS13935 (ECP_2726)	surE	2864414..2865175 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECP_RS13940 (ECP_2727)	truD	2865156..2866205 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
ECP_RS13945 (ECP_2728)	ispF	2866202..2866681 (-)	480	WP_001219252.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECP_RS13950 (ECP_2729)	ispD	2866681..2867391 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=25761 ECP_RS13920 WP_000081550.1 2861460..2862452(-) (rpoS) [Escherichia coli 536]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=25761 ECP_RS13920 WP_000081550.1 2861460..2862452(-) (rpoS) [Escherichia coli 536]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGTTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715