Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | PCRYO_RS01410 | Genome accession | NC_007969 |
| Coordinates | 319728..320183 (+) | Length | 151 a.a. |
| NCBI ID | WP_011512641.1 | Uniprot ID | - |
| Organism | Psychrobacter cryohalolentis K5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 314728..325183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCRYO_RS01400 (Pcryo_0267) | - | 318397..318945 (+) | 549 | WP_011512639.1 | type IV pilin protein | - |
| PCRYO_RS01405 (Pcryo_0268) | - | 318945..319418 (+) | 474 | WP_011512640.1 | type IV pilin protein | - |
| PCRYO_RS01410 (Pcryo_0269) | pilE | 319728..320183 (+) | 456 | WP_011512641.1 | pilin | Machinery gene |
| PCRYO_RS01415 (Pcryo_0270) | - | 320190..321467 (+) | 1278 | WP_011512642.1 | O-antigen ligase family protein | - |
| PCRYO_RS01420 (Pcryo_0271) | - | 321563..322012 (+) | 450 | WP_192941314.1 | pilin | - |
| PCRYO_RS01425 (Pcryo_0272) | fdxA | 322122..322445 (-) | 324 | WP_011512644.1 | ferredoxin FdxA | - |
Sequence
Protein
Download Length: 151 a.a. Molecular weight: 15287.53 Da Isoelectric Point: 8.4477
>NTDB_id=25761 PCRYO_RS01410 WP_011512641.1 319728..320183(+) (pilE) [Psychrobacter cryohalolentis K5]
MNTAQKGFTLIELMIVIAIIGILAAIAIPAYQDYIARSQVAEAFALTAGQKTAIAEYAQTNGVYPGTATAPTNGSLTAAG
TYADATVAAGTGVITVTMKPAGTVNANIAGKTITLTPPALTGSNTTFNFSCTTTGGTKMDQKYLPKSCVAS
MNTAQKGFTLIELMIVIAIIGILAAIAIPAYQDYIARSQVAEAFALTAGQKTAIAEYAQTNGVYPGTATAPTNGSLTAAG
TYADATVAAGTGVITVTMKPAGTVNANIAGKTITLTPPALTGSNTTFNFSCTTTGGTKMDQKYLPKSCVAS
Nucleotide
Download Length: 456 bp
>NTDB_id=25761 PCRYO_RS01410 WP_011512641.1 319728..320183(+) (pilE) [Psychrobacter cryohalolentis K5]
ATGAACACTGCACAAAAAGGTTTTACCTTAATCGAACTAATGATCGTAATCGCCATTATCGGTATCTTGGCTGCGATCGC
TATCCCTGCTTATCAGGACTATATTGCTCGTTCACAAGTAGCTGAAGCTTTTGCTCTTACTGCTGGACAAAAAACTGCTA
TTGCAGAATATGCGCAAACTAATGGTGTTTATCCGGGTACAGCTACAGCGCCGACAAATGGTTCTTTGACAGCTGCTGGA
ACTTACGCTGATGCTACAGTAGCAGCGGGTACTGGTGTTATTACTGTGACTATGAAACCGGCTGGTACTGTAAATGCTAA
TATCGCTGGTAAAACAATTACTTTAACGCCACCTGCACTTACAGGCTCTAATACTACTTTCAACTTTAGCTGTACTACAA
CTGGTGGTACTAAGATGGATCAAAAATACCTACCTAAGTCTTGTGTAGCTAGCTAA
ATGAACACTGCACAAAAAGGTTTTACCTTAATCGAACTAATGATCGTAATCGCCATTATCGGTATCTTGGCTGCGATCGC
TATCCCTGCTTATCAGGACTATATTGCTCGTTCACAAGTAGCTGAAGCTTTTGCTCTTACTGCTGGACAAAAAACTGCTA
TTGCAGAATATGCGCAAACTAATGGTGTTTATCCGGGTACAGCTACAGCGCCGACAAATGGTTCTTTGACAGCTGCTGGA
ACTTACGCTGATGCTACAGTAGCAGCGGGTACTGGTGTTATTACTGTGACTATGAAACCGGCTGGTACTGTAAATGCTAA
TATCGCTGGTAAAACAATTACTTTAACGCCACCTGCACTTACAGGCTCTAATACTACTTTCAACTTTAGCTGTACTACAA
CTGGTGGTACTAAGATGGATCAAAAATACCTACCTAAGTCTTGTGTAGCTAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
46.497 |
100 |
0.483 |
| pilE | Neisseria gonorrhoeae MS11 |
44.512 |
100 |
0.483 |
| comP | Acinetobacter baylyi ADP1 |
44.304 |
100 |
0.464 |
| pilA2 | Legionella pneumophila str. Paris |
48.276 |
96.026 |
0.464 |
| pilA | Acinetobacter baumannii strain A118 |
44.586 |
100 |
0.464 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
44.025 |
100 |
0.464 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
47.586 |
96.026 |
0.457 |
| pilA | Pseudomonas aeruginosa PAK |
42.949 |
100 |
0.444 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
43.836 |
96.689 |
0.424 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.744 |
100 |
0.411 |
| pilA | Vibrio cholerae strain A1552 |
38.217 |
100 |
0.397 |
| pilA | Vibrio cholerae C6706 |
38.217 |
100 |
0.397 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.217 |
100 |
0.397 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.411 |
100 |
0.384 |