Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DLM82_RS05390 Genome accession   NZ_CP029749
Coordinates   1007286..1008356 (-) Length   356 a.a.
NCBI ID   WP_000817933.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain PLGBS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1002286..1013356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM82_RS05370 (DLM82_05360) - 1002821..1003573 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  DLM82_RS05375 (DLM82_05365) - 1003575..1005530 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  DLM82_RS05380 (DLM82_05370) braR 1005640..1006308 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  DLM82_RS05385 (DLM82_05375) - 1006305..1007243 (+) 939 WP_000620981.1 HAMP domain-containing sensor histidine kinase -
  DLM82_RS05390 (DLM82_05380) xerS 1007286..1008356 (-) 1071 WP_000817933.1 tyrosine recombinase XerS Machinery gene
  DLM82_RS05395 (DLM82_05385) - 1008809..1010470 (+) 1662 WP_000093960.1 peptide ABC transporter substrate-binding protein -
  DLM82_RS05400 (DLM82_05390) - 1010503..1011276 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  DLM82_RS05405 (DLM82_05395) - 1011266..1011952 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41360.56 Da        Isoelectric Point: 9.4625

>NTDB_id=257573 DLM82_RS05390 WP_000817933.1 1007286..1008356(-) (xerS) [Streptococcus agalactiae strain PLGBS13]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYINCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=257573 DLM82_RS05390 WP_000817933.1 1007286..1008356(-) (xerS) [Streptococcus agalactiae strain PLGBS13]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAAATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(184-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834