Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CWR52_RS04520 Genome accession   NZ_CP025034
Coordinates   914875..915501 (-) Length   208 a.a.
NCBI ID   WP_104948964.1    Uniprot ID   -
Organism   Enterobacter sp. SGAir0187     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 905368..916228 914875..915501 within 0


Gene organization within MGE regions


Location: 905368..916228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWR52_RS04470 (CWR52_04455) - 905368..905682 (+) 315 WP_104948956.1 hypothetical protein -
  CWR52_RS04475 (CWR52_04460) - 905679..906488 (-) 810 WP_104948957.1 DUF4225 domain-containing protein -
  CWR52_RS04480 (CWR52_04465) rlmI 906658..907848 (+) 1191 WP_104948958.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  CWR52_RS04485 (CWR52_04470) hspQ 907909..908226 (+) 318 WP_008499919.1 heat shock protein HspQ -
  CWR52_RS04490 (CWR52_04475) - 908264..908677 (-) 414 WP_008499920.1 CoA-binding protein -
  CWR52_RS04495 (CWR52_04485) csgI 908851..909513 (+) 663 WP_104948960.1 curli synthesis inhibitor -
  CWR52_RS04500 (CWR52_04490) mgsA 909594..910052 (+) 459 WP_104948961.1 methylglyoxal synthase -
  CWR52_RS04505 (CWR52_04495) helD 910112..912166 (-) 2055 WP_104948962.1 DNA helicase IV -
  CWR52_RS04510 (CWR52_04500) - 912290..912736 (+) 447 WP_023343701.1 YccF domain-containing protein -
  CWR52_RS04515 (CWR52_04505) yccS 912756..914918 (+) 2163 WP_104948963.1 YccS family putative transporter -
  CWR52_RS04520 (CWR52_04510) sxy/tfoX 914875..915501 (-) 627 WP_104948964.1 TfoX/Sxy family DNA transformation protein Regulator
  CWR52_RS04525 (CWR52_04515) sulA 915719..916228 (+) 510 WP_032637628.1 SOS-induced cell division inhibitor SulA -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23840.45 Da        Isoelectric Point: 9.7954

>NTDB_id=257511 CWR52_RS04520 WP_104948964.1 914875..915501(-) (sxy/tfoX) [Enterobacter sp. SGAir0187]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRARLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=257511 CWR52_RS04520 WP_104948964.1 914875..915501(-) (sxy/tfoX) [Enterobacter sp. SGAir0187]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGCTACACCCTGGCGGTGGATGATGCGGTTTTTGCTATGGTGTCTGATGGCGAGCTTTATCTTCGGGCTTGTG
AGGAGAGTGCGAAATATTGTGTAAAGAATGCTTCCTCCTTTTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGCGCGGTTGCTTCAGCTCTCTTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTATCAGCGCCATCAACGAAACCGACTCAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCACTGGGGGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAGGCACTGAGTATAAAAGTGCTTTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAGTCGTTCTTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment