Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECP_RS10420 Genome accession   NC_008253
Coordinates   2115981..2116457 (+) Length   158 a.a.
NCBI ID   WP_011579144.1    Uniprot ID   -
Organism   Escherichia coli 536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2110981..2121457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS10390 (ECP_2040) - 2111878..2112948 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  ECP_RS10395 (ECP_2041) - 2113084..2113761 (+) 678 WP_001362823.1 hypothetical protein -
  ECP_RS10400 (ECP_2042) - 2113777..2114187 (+) 411 WP_000846704.1 hypothetical protein -
  ECP_RS10405 (ECP_2043) - 2114408..2115229 (+) 822 WP_001234571.1 DUF932 domain-containing protein -
  ECP_RS10415 (ECP_2044) - 2115492..2115965 (+) 474 WP_011579143.1 antirestriction protein -
  ECP_RS10420 (ECP_2045) radC 2115981..2116457 (+) 477 WP_011579144.1 JAB domain-containing protein Machinery gene
  ECP_RS10425 (ECP_2046) yeeT 2116526..2116747 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECP_RS10430 (ECP_2047) cbeA 2116821..2117189 (+) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECP_RS10435 (ECP_2048) cbtA 2117278..2117652 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ECP_RS10440 (ECP_2049) yeeW 2117649..2117843 (+) 195 WP_000988601.1 DUF5983 family protein -
  ECP_RS26915 - 2117889..2117969 (+) 81 Protein_2009 hypothetical protein -
  ECP_RS25035 - 2118258..2118404 (-) 147 Protein_2010 transposase domain-containing protein -
  ECP_RS10450 - 2118458..2118640 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ECP_RS10455 (ECP_2051) tmaR 2118741..2119070 (-) 330 WP_000450409.1 DUF496 family protein -
  ECP_RS10460 (ECP_2052) yeeA 2119242..2120300 (-) 1059 WP_001200890.1 FUSC family protein -
  ECP_RS10465 (ECP_2053) sbmC 2120498..2120971 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17623.27 Da        Isoelectric Point: 6.6960

>NTDB_id=25747 ECP_RS10420 WP_011579144.1 2115981..2116457(+) (radC) [Escherichia coli 536]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPWEVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25747 ECP_RS10420 WP_011579144.1 2115981..2116457(+) (radC) [Escherichia coli 536]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCTGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392