Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECP_RS02660 Genome accession   NC_008253
Coordinates   561646..562251 (+) Length   201 a.a.
NCBI ID   WP_001195030.1    Uniprot ID   Q0TKG9
Organism   Escherichia coli 536     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556646..567251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS27795 - 557200..557298 (+) 99 Protein_513 hypothetical protein -
  ECP_RS02630 (ECP_0527) rsmS 557351..557512 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECP_RS02635 (ECP_0528) priC 557526..558053 (-) 528 WP_000844854.1 primosomal replication protein N'' -
  ECP_RS02640 (ECP_0529) ybaN 558123..558500 (+) 378 WP_001188900.1 DUF454 family protein -
  ECP_RS02645 (ECP_0530) apt 558653..559204 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  ECP_RS02650 (ECP_0531) dnaX 559333..561264 (+) 1932 WP_000122025.1 DNA polymerase III subunit gamma/tau -
  ECP_RS02655 (ECP_0532) ybaB 561317..561646 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECP_RS02660 (ECP_0533) recR 561646..562251 (+) 606 WP_001195030.1 recombination mediator RecR Machinery gene
  ECP_RS02665 (ECP_0534) htpG 562361..564235 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECP_RS02670 (ECP_0535) adk 564416..565060 (+) 645 WP_001313630.1 adenylate kinase -
  ECP_RS02675 (ECP_0536) hemH 565192..566154 (+) 963 WP_001250114.1 ferrochelatase -
  ECP_RS02680 (ECP_0537) aes 566129..567097 (-) 969 WP_000801820.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21993.07 Da        Isoelectric Point: 5.0822

>NTDB_id=25732 ECP_RS02660 WP_001195030.1 561646..562251(+) (recR) [Escherichia coli 536]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQTLTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=25732 ECP_RS02660 WP_001195030.1 561646..562251(+) (recR) [Escherichia coli 536]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGACGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TKG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

99.005

0.443
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438

Multiple sequence alignment