Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AM464_RS19390 Genome accession   NZ_CP029741
Coordinates   3738484..3739089 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AR_0085     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3733484..3744089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM464_RS19355 (AM464_19350) rsmS 3734189..3734350 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  AM464_RS19360 (AM464_19355) priC 3734364..3734891 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  AM464_RS19365 (AM464_19360) ybaN 3734961..3735338 (+) 378 WP_001188905.1 DUF454 family protein -
  AM464_RS19375 (AM464_19370) apt 3735491..3736042 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AM464_RS19380 (AM464_19375) dnaX 3736171..3738102 (+) 1932 WP_110844195.1 DNA polymerase III subunit gamma/tau -
  AM464_RS19385 (AM464_19380) ybaB 3738155..3738484 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AM464_RS19390 (AM464_19385) recR 3738484..3739089 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  AM464_RS19395 (AM464_19390) htpG 3739199..3741073 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  AM464_RS19405 (AM464_19400) adk 3741254..3741898 (+) 645 WP_001220233.1 adenylate kinase -
  AM464_RS19410 (AM464_19405) hemH 3742134..3743096 (+) 963 WP_001250088.1 ferrochelatase -
  AM464_RS19415 (AM464_19410) aes 3743093..3744052 (-) 960 WP_000801850.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=257312 AM464_RS19390 WP_001195025.1 3738484..3739089(+) (recR) [Escherichia coli strain AR_0085]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=257312 AM464_RS19390 WP_001195025.1 3738484..3739089(+) (recR) [Escherichia coli strain AR_0085]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443