Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM464_RS10975 Genome accession   NZ_CP029741
Coordinates   2113438..2114106 (-) Length   222 a.a.
NCBI ID   WP_110844059.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2108438..2119106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM464_RS10945 (AM464_10940) rfaQ 2108616..2109674 (-) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -
  AM464_RS10950 (AM464_10945) waaA 2110087..2111364 (+) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  AM464_RS10955 (AM464_10950) coaD 2111372..2111851 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  AM464_RS10960 (AM464_10955) mutM 2111890..2112699 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AM464_RS10965 (AM464_10960) rpmG 2112797..2112964 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  AM464_RS10970 (AM464_10965) rpmB 2112985..2113221 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  AM464_RS10975 (AM464_10970) radC 2113438..2114106 (-) 669 WP_110844059.1 DNA repair protein RadC Machinery gene
  AM464_RS10980 (AM464_10975) coaBC 2114278..2115498 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM464_RS10985 (AM464_10980) dut 2115476..2115934 (+) 459 WP_000976070.1 dUTP diphosphatase -
  AM464_RS10990 (AM464_10985) slmA 2116041..2116637 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  AM464_RS10995 (AM464_10990) pyrE 2116674..2117315 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  AM464_RS11000 (AM464_10995) rph 2117381..2118097 (-) 717 WP_001247089.1 ribonuclease PH -
  AM464_RS11010 (AM464_11005) yicC 2118224..2119087 (+) 864 WP_000621336.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25239.30 Da        Isoelectric Point: 7.5478

>NTDB_id=257281 AM464_RS10975 WP_110844059.1 2113438..2114106(-) (radC) [Escherichia coli strain AR_0085]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARHYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=257281 AM464_RS10975 WP_110844059.1 2113438..2114106(-) (radC) [Escherichia coli strain AR_0085]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCATTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment