Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | ECP_RS01675 | Genome accession | NC_008253 |
| Coordinates | 357452..357928 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186199.1 | Uniprot ID | Q83W77 |
| Organism | Escherichia coli 536 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 352452..362928
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECP_RS01660 (ECP_0332) | agn43 | 352592..355714 (+) | 3123 | WP_000820396.1 | autotransporter adhesin Ag43 | - |
| ECP_RS01665 (ECP_0333) | - | 356041..356859 (+) | 819 | WP_001234709.1 | DUF932 domain-containing protein | - |
| ECP_RS01670 (ECP_0334) | - | 356951..357436 (+) | 486 | WP_000213723.1 | antirestriction protein | - |
| ECP_RS01675 (ECP_0335) | radC | 357452..357928 (+) | 477 | WP_001186199.1 | JAB domain-containing protein | Machinery gene |
| ECP_RS01680 (ECP_0336) | - | 357997..358218 (+) | 222 | WP_000692353.1 | DUF987 domain-containing protein | - |
| ECP_RS01690 (ECP_0337) | cbeA | 358381..358749 (+) | 369 | WP_001278232.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| ECP_RS01695 (ECP_0338) | - | 358839..359216 (+) | 378 | WP_000854700.1 | TA system toxin CbtA family protein | - |
| ECP_RS01700 (ECP_0339) | - | 359213..359701 (+) | 489 | WP_000761726.1 | DUF5983 family protein | - |
| ECP_RS01705 (ECP_0340) | - | 359713..359910 (+) | 198 | WP_000839247.1 | DUF957 domain-containing protein | - |
| ECP_RS01710 (ECP_0341) | - | 359995..360849 (+) | 855 | WP_024174313.1 | DUF4942 domain-containing protein | - |
| ECP_RS01715 (ECP_0342) | - | 360942..362261 (-) | 1320 | WP_000144686.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17734.36 Da Isoelectric Point: 7.6152
>NTDB_id=25728 ECP_RS01675 WP_001186199.1 357452..357928(+) (radC) [Escherichia coli 536]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=25728 ECP_RS01675 WP_001186199.1 357452..357928(+) (radC) [Escherichia coli 536]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |