Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM464_RS06885 Genome accession   NZ_CP029741
Coordinates   1334663..1335139 (+) Length   158 a.a.
NCBI ID   WP_001186164.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1329663..1340139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM464_RS06855 (AM464_06855) - 1330401..1331099 (+) 699 WP_249940377.1 hypothetical protein -
  AM464_RS06860 (AM464_06860) - 1331096..1332082 (-) 987 WP_029396404.1 hypothetical protein -
  AM464_RS06865 (AM464_06865) - 1332189..1333073 (+) 885 WP_110844013.1 GTPase -
  AM464_RS06870 (AM464_06870) - 1333258..1334076 (+) 819 WP_099441935.1 DUF932 domain-containing protein -
  AM464_RS06875 (AM464_06875) - 1334178..1334651 (+) 474 WP_103856377.1 antirestriction protein -
  AM464_RS06885 (AM464_06885) radC 1334663..1335139 (+) 477 WP_001186164.1 RadC family protein Machinery gene
  AM464_RS06890 (AM464_06890) - 1335251..1335445 (+) 195 WP_238974235.1 DUF987 family protein -
  AM464_RS06895 (AM464_06895) - 1335462..1336106 (+) 645 WP_099441936.1 antitoxin of toxin-antitoxin stability system -
  AM464_RS06900 (AM464_06900) - 1336144..1336521 (+) 378 WP_099441937.1 type IV toxin-antitoxin system YeeU family antitoxin -
  AM464_RS06905 (AM464_06905) - 1336568..1336945 (+) 378 WP_096986228.1 TA system toxin CbtA family protein -
  AM464_RS06910 (AM464_06910) - 1336942..1337429 (+) 488 Protein_1291 DUF5983 family protein -
  AM464_RS06915 (AM464_06915) - 1337449..1337646 (+) 198 WP_001349630.1 DUF957 domain-containing protein -
  AM464_RS06920 (AM464_06920) - 1337743..1338609 (+) 867 WP_099441939.1 DUF4942 domain-containing protein -
  AM464_RS06925 (AM464_06925) - 1338678..1338941 (+) 264 WP_099441940.1 type II toxin-antitoxin system ParD family antitoxin -
  AM464_RS06930 (AM464_06930) - 1338938..1339255 (+) 318 WP_099441941.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AM464_RS06935 (AM464_06935) - 1339726..1339896 (+) 171 Protein_1296 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17605.25 Da        Isoelectric Point: 7.6860

>NTDB_id=257264 AM464_RS06885 WP_001186164.1 1334663..1335139(+) (radC) [Escherichia coli strain AR_0085]
MQQISFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILHMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVVKRALYHNAAAVVLAHNHPSGEVTPGKADRLITERLVQALALVDIRVPDHLIVGGSRVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=257264 AM464_RS06885 WP_001186164.1 1334663..1335139(+) (radC) [Escherichia coli strain AR_0085]
ATGCAACAGATTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGTCTCATTCAGCGTGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGCACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTACCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGGTTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCATCCGTCCGGTGAAGTCACACCCGGTAAGGCTGACCGGCTTATCACGGAACGGCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCGGGTGTTCTCCTTTGCCGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment