Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CKO49_RS12960 Genome accession   NZ_CP025023
Coordinates   2631299..2631964 (-) Length   221 a.a.
NCBI ID   WP_000697875.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain XNO106     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2626299..2636964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKO49_RS12945 (CKO49_12945) - 2627536..2629542 (-) 2007 WP_031788272.1 ABC transporter permease -
  CKO49_RS12950 (CKO49_12950) - 2629539..2630294 (-) 756 WP_031788273.1 ABC transporter ATP-binding protein -
  CKO49_RS12955 (CKO49_12955) braS 2630401..2631288 (-) 888 WP_031788274.1 sensor histidine kinase Regulator
  CKO49_RS12960 (CKO49_12960) braR 2631299..2631964 (-) 666 WP_000697875.1 response regulator transcription factor Regulator
  CKO49_RS12965 (CKO49_12965) - 2632000..2632185 (-) 186 WP_000604733.1 hypothetical protein -
  CKO49_RS12970 (CKO49_12970) - 2632375..2632599 (-) 225 Protein_2459 ATP-binding protein -
  CKO49_RS12975 (CKO49_12975) - 2632580..2632953 (+) 374 Protein_2460 transposase -
  CKO49_RS12980 (CKO49_12980) - 2632985..2633539 (-) 555 WP_031788277.1 TetR/AcrR family transcriptional regulator -
  CKO49_RS12985 (CKO49_12985) - 2633718..2634632 (+) 915 WP_031788278.1 alpha/beta hydrolase -
  CKO49_RS12990 (CKO49_12990) - 2634653..2635291 (+) 639 WP_031788279.1 SDR family oxidoreductase -
  CKO49_RS12995 (CKO49_12995) - 2635362..2636072 (+) 711 WP_000193375.1 dihydrofolate reductase family protein -
  CKO49_RS13000 (CKO49_13000) - 2636087..2636839 (+) 753 WP_031788280.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25270.26 Da        Isoelectric Point: 4.7961

>NTDB_id=257254 CKO49_RS12960 WP_000697875.1 2631299..2631964(-) (braR) [Staphylococcus argenteus strain XNO106]
MKILIVEDDFVIAESLASELKKWNYDVVVAEQFDNITAVFNNHQPQLVLLDINLPTLNGFHWCQEIRKTSNVPIMFISSR
IDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLTVVNDTLTVKGCTLILDEAKVAYQGESIQLSLTELQILK
LLFQSEDKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLSTIGLNDFITTKKNVGYKV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=257254 CKO49_RS12960 WP_000697875.1 2631299..2631964(-) (braR) [Staphylococcus argenteus strain XNO106]
ATGAAAATATTAATTGTTGAAGATGATTTTGTTATAGCGGAAAGTTTAGCATCTGAATTAAAAAAATGGAATTATGATGT
GGTTGTGGCAGAACAGTTTGATAATATAACAGCCGTTTTTAACAATCATCAACCACAGCTTGTGCTGTTAGATATCAATT
TACCTACTTTAAATGGTTTTCATTGGTGCCAAGAAATACGCAAAACATCAAATGTACCTATCATGTTTATTAGTTCGCGT
ATTGATAACATGGATCAAATTATGGCTATACAAATGGGTGGCGATGATTTTATTGAAAAACCATTCAATTTGTCATTAAC
TATTGCTAAAATTCAAGCGCTTTTAAGACGTACTTATGATCTAACAGTAGTCAATGATACGCTGACAGTCAAAGGGTGTA
CGCTAATATTAGATGAGGCTAAGGTTGCTTATCAAGGGGAGAGTATACAGCTGTCTTTGACGGAATTACAAATTTTAAAA
TTGTTGTTCCAAAGCGAAGACAAGTATGTGAGTCGAACAGCTTTAATTGAAAAATGCTGGGAGTCTGAAAACTTCATAGA
TGATAATACATTAGCAGTAAATATGACACGTCTACGTAAAAAATTAAGTACTATAGGCCTCAATGATTTTATCACTACCA
AGAAAAATGTTGGATATAAAGTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-220)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

90.95

100

0.91

Multiple sequence alignment