Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   CKO49_RS07575 Genome accession   NZ_CP025023
Coordinates   1577230..1578300 (-) Length   356 a.a.
NCBI ID   WP_031787261.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain XNO106     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572230..1583300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKO49_RS07535 (CKO49_07535) gcvPA 1572407..1573753 (-) 1347 WP_031787255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CKO49_RS07540 (CKO49_07540) gcvT 1573772..1574863 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  CKO49_RS07545 (CKO49_07545) - 1575020..1575544 (-) 525 WP_031787256.1 shikimate kinase -
  CKO49_RS07550 (CKO49_07550) - 1575531..1575680 (-) 150 WP_072324192.1 hypothetical protein -
  CKO49_RS07555 (CKO49_07555) comGF 1575779..1576276 (-) 498 WP_072324133.1 competence type IV pilus minor pilin ComGF Machinery gene
  CKO49_RS07560 (CKO49_07560) comGE 1576194..1576493 (-) 300 WP_031787259.1 hypothetical protein Machinery gene
  CKO49_RS07565 (CKO49_07565) comGD 1576480..1576926 (-) 447 WP_072324131.1 competence type IV pilus minor pilin ComGD Machinery gene
  CKO49_RS07570 (CKO49_07570) comGC 1576904..1577215 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  CKO49_RS07575 (CKO49_07575) comGB 1577230..1578300 (-) 1071 WP_031787261.1 competence type IV pilus assembly protein ComGB Machinery gene
  CKO49_RS07580 (CKO49_07580) comGA 1578272..1579246 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  CKO49_RS07585 (CKO49_07585) - 1579298..1579921 (-) 624 WP_031787263.1 MBL fold metallo-hydrolase -
  CKO49_RS07590 (CKO49_07590) - 1579918..1580247 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  CKO49_RS07595 (CKO49_07595) - 1580247..1581233 (-) 987 WP_000161316.1 ROK family glucokinase -
  CKO49_RS07600 (CKO49_07600) - 1581233..1581433 (-) 201 WP_000087563.1 YqgQ family protein -
  CKO49_RS07605 (CKO49_07605) - 1581414..1582877 (-) 1464 WP_100848586.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41705.06 Da        Isoelectric Point: 10.2079

>NTDB_id=257236 CKO49_RS07575 WP_031787261.1 1577230..1578300(-) (comGB) [Staphylococcus argenteus strain XNO106]
MKVQWISIFKKYSKKRQLNRAQQIELIVNLKNLLQYGFTLYQSFQFLNLQIKYKDKELSSKILSEISNGASCSKILAMLG
YSDTIVMQIYLAERFGNIVDILDETVKFMKINRKSEQRLLKTLQYPLVLVSVFIGMIMMLNITVIPQFQQLYTSMNIKLS
TFQKALSFFISSLPSLILITIFLILILTSSIKLIYNRLTMLYKINFMMKIPILSSYYKLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEKGHGLPEILSNLKCFKPQLIKFIQQGEKRGKLEVELRLYSQILVKQIEDKAIR
QTQFIQPILFLILGLFIVAIYLVIMLPMFQMMQSIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=257236 CKO49_RS07575 WP_031787261.1 1577230..1578300(-) (comGB) [Staphylococcus argenteus strain XNO106]
GTGAAAGTACAATGGATAAGTATATTTAAAAAATATTCTAAGAAACGACAATTAAACAGAGCACAACAAATAGAGTTAAT
TGTAAATTTAAAGAATTTACTACAATATGGGTTCACATTATATCAAAGCTTTCAGTTTCTAAACCTTCAAATTAAATATA
AAGATAAAGAGCTATCGTCAAAAATTCTTAGCGAAATTTCAAATGGTGCATCGTGTAGCAAAATACTAGCCATGTTAGGC
TATAGTGATACTATAGTAATGCAAATTTACTTAGCAGAAAGGTTTGGTAATATTGTAGATATCTTAGATGAAACAGTGAA
ATTTATGAAAATAAATAGAAAATCCGAGCAAAGATTATTAAAAACTTTGCAATATCCCTTAGTGTTAGTTTCAGTATTTA
TAGGAATGATTATGATGTTGAATATCACTGTTATTCCACAATTCCAACAACTATATACTTCAATGAATATTAAATTATCA
ACATTTCAAAAAGCACTTTCCTTTTTTATCTCAAGTTTACCCTCATTAATTTTAATAACAATTTTTCTTATTTTAATTTT
AACCTCCTCAATAAAATTAATTTATAACAGGCTAACGATGTTATATAAAATCAACTTTATGATGAAGATACCAATTTTAT
CCAGTTATTATAAGTTGTTCAAAACTTATTTTGTTACAAATGAATTAGTTTTATTCTATAAAAATGGTATTACACTCCAA
TCTATCGTTGATGTTTATATCAATCATAGTAGTGATCCATTCAGACAATTTTTAGGTGAATATTTATTAACATATTCAGA
AAAAGGACATGGGTTACCGGAAATTTTATCAAATTTAAAGTGCTTTAAACCACAATTGATAAAGTTTATACAGCAAGGTG
AAAAAAGAGGGAAATTAGAAGTTGAGCTTAGATTATACTCTCAAATTTTAGTGAAACAAATTGAAGATAAAGCGATTCGT
CAAACTCAATTTATACAACCAATTTTATTTTTAATCTTAGGGCTTTTTATTGTTGCAATTTATTTGGTAATAATGCTACC
AATGTTCCAAATGATGCAAAGTATTAATTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(32-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

78.028

99.719

0.778
  comGB Staphylococcus aureus N315

78.028

99.719

0.778

Multiple sequence alignment