Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DCS61_RS29005 Genome accession   NZ_CP029707
Coordinates   6032865..6033230 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain K34-7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6027865..6038230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCS61_RS28975 (DCS61_28975) pyrR 6028487..6028999 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  DCS61_RS28980 (DCS61_28980) ruvX 6029111..6029545 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  DCS61_RS28985 (DCS61_28985) - 6029545..6030114 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  DCS61_RS28990 (DCS61_28990) - 6030163..6031056 (-) 894 WP_003084580.1 TonB family protein -
  DCS61_RS28995 (DCS61_28995) gshB 6031203..6032156 (-) 954 WP_003100943.1 glutathione synthase -
  DCS61_RS29000 (DCS61_29000) pilG 6032411..6032818 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  DCS61_RS29005 (DCS61_29005) pilH 6032865..6033230 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  DCS61_RS29010 (DCS61_29010) - 6033281..6033817 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  DCS61_RS29015 (DCS61_29015) pilJ 6033902..6035950 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  DCS61_RS29020 (DCS61_29020) pilK 6036011..6036886 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=257230 DCS61_RS29005 WP_003084587.1 6032865..6033230(+) (pilH) [Pseudomonas aeruginosa strain K34-7]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=257230 DCS61_RS29005 WP_003084587.1 6032865..6033230(+) (pilH) [Pseudomonas aeruginosa strain K34-7]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364