Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DCS61_RS07180 Genome accession   NZ_CP029707
Coordinates   1460847..1461353 (-) Length   168 a.a.
NCBI ID   WP_033942177.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain K34-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1455847..1466353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCS61_RS07165 (DCS61_07165) - 1456353..1458398 (-) 2046 WP_033942168.1 ParB/RepB/Spo0J family partition protein -
  DCS61_RS07170 (DCS61_07170) - 1458468..1459292 (-) 825 WP_033942171.1 DUF932 domain-containing protein -
  DCS61_RS07175 (DCS61_07175) - 1459886..1460695 (+) 810 WP_033942174.1 hypothetical protein -
  DCS61_RS07180 (DCS61_07180) radC 1460847..1461353 (-) 507 WP_033942177.1 DNA repair protein RadC Machinery gene
  DCS61_RS07190 (DCS61_07190) - 1461744..1461935 (+) 192 WP_033942179.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  DCS61_RS07195 (DCS61_07195) - 1461984..1462904 (+) 921 WP_033942181.1 ABC-three component system protein -
  DCS61_RS07200 (DCS61_07200) - 1462901..1463149 (+) 249 WP_033942183.1 ABC-three component system middle component 6 -
  DCS61_RS07205 (DCS61_07205) - 1463146..1464867 (+) 1722 WP_033942184.1 ABC-three component system protein -
  DCS61_RS07210 (DCS61_07210) - 1464994..1465776 (+) 783 WP_198073773.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18661.23 Da        Isoelectric Point: 6.8475

>NTDB_id=257161 DCS61_RS07180 WP_033942177.1 1460847..1461353(-) (radC) [Pseudomonas aeruginosa strain K34-7]
MSQRSLSSDASLLVRDGRGRYLPASAEQILEAARRVIDQKMQRGTEFSSPAVVKEYLRTKLAGFEHEVFAVLFLDTRHRL
IEYVEMFRGSIDSAEVHPREVVKEALQHNAAAVIFAHNHPSGNPEPSAADRALTQRLKEALALVEVRTLDHVIVAGDRTT
AFAECGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=257161 DCS61_RS07180 WP_033942177.1 1460847..1461353(-) (radC) [Pseudomonas aeruginosa strain K34-7]
ATGTCGCAACGTTCCCTCTCTTCCGATGCCTCGCTGCTGGTGCGTGACGGCCGTGGCCGCTATCTGCCGGCGTCGGCCGA
GCAGATCCTAGAGGCCGCGCGTCGGGTCATCGACCAGAAGATGCAACGTGGTACCGAGTTCAGTTCGCCGGCGGTGGTCA
AGGAGTACCTGCGCACCAAGCTCGCCGGCTTCGAGCACGAGGTCTTCGCGGTCCTGTTCCTCGATACGCGCCATCGGCTG
ATCGAGTACGTCGAGATGTTCCGCGGGTCGATCGACAGCGCCGAGGTCCATCCGCGCGAGGTAGTCAAGGAGGCGCTGCA
GCACAACGCGGCGGCGGTGATCTTCGCGCACAACCATCCGAGCGGGAATCCCGAGCCGAGCGCTGCCGATCGGGCACTGA
CCCAGCGGCTCAAGGAGGCGCTGGCGCTGGTCGAGGTGCGCACGCTGGATCACGTCATCGTTGCTGGCGACCGGACGACG
GCATTCGCCGAGTGCGGCCTGCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.479

84.524

0.393