Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DCS61_RS05335 Genome accession   NZ_CP029707
Coordinates   1079598..1080095 (-) Length   165 a.a.
NCBI ID   WP_033942928.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain K34-7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1074598..1085095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCS61_RS33940 - 1078221..1078658 (-) 438 WP_033942934.1 LPD1 domain-containing protein -
  DCS61_RS05325 (DCS61_05325) - 1078828..1079073 (+) 246 WP_033942931.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  DCS61_RS05330 (DCS61_05330) - 1079063..1079344 (+) 282 WP_071557699.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DCS61_RS05335 (DCS61_05335) radC 1079598..1080095 (-) 498 WP_033942928.1 DNA repair protein RadC Machinery gene
  DCS61_RS05340 (DCS61_05340) - 1080106..1081017 (-) 912 WP_033942927.1 hypothetical protein -
  DCS61_RS05345 (DCS61_05345) - 1081110..1082114 (-) 1005 WP_033942926.1 lambda-exonuclease family protein -
  DCS61_RS05350 (DCS61_05350) - 1082189..1083157 (-) 969 WP_033942925.1 DUF932 domain-containing protein -
  DCS61_RS05360 (DCS61_05360) - 1083984..1084181 (+) 198 WP_232092115.1 AlpA family phage regulatory protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18268.06 Da        Isoelectric Point: 6.6969

>NTDB_id=257155 DCS61_RS05335 WP_033942928.1 1079598..1080095(-) (radC) [Pseudomonas aeruginosa strain K34-7]
MRLHKLKASDTTGTYLVESPVTESDILLMAKQLASMRLRKGRALTSPKEVFSHLQALLADYEHEVFALLMLDSRHRVIAF
EELFRGTLDGASVYPREVVKLALEHNAAALILVHNHPSGDPEPSMADRNLTTKLQDALNLVGVRTLDHVVVGQEGCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=257155 DCS61_RS05335 WP_033942928.1 1079598..1080095(-) (radC) [Pseudomonas aeruginosa strain K34-7]
ATGCGTCTGCACAAGCTGAAAGCCAGTGACACGACCGGCACCTACCTGGTCGAGTCGCCGGTGACGGAAAGCGACATCTT
GCTGATGGCCAAACAACTGGCCAGTATGCGTCTACGCAAGGGACGTGCCCTGACGTCGCCTAAGGAGGTGTTCAGTCACC
TGCAGGCGCTGCTGGCTGATTATGAGCACGAGGTGTTCGCACTGCTCATGCTCGACAGCCGGCACCGGGTGATCGCATTT
GAGGAGCTGTTCAGGGGGACTCTCGATGGAGCCAGCGTGTATCCCAGGGAGGTCGTGAAGCTCGCCCTGGAGCACAACGC
CGCCGCCCTGATCCTGGTGCACAACCACCCTTCGGGTGACCCTGAACCCAGCATGGCGGATCGAAACCTCACCACGAAAC
TGCAGGACGCACTGAATCTGGTCGGAGTCAGAACGCTCGATCACGTTGTGGTAGGCCAGGAGGGTTGTGTGTCGCTGGCT
GAGCGCGGCTACCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(45-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

73.939

0.37