Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPAG1_RS03910 Genome accession   NC_008086
Coordinates   816988..818508 (-) Length   506 a.a.
NCBI ID   WP_000611011.1    Uniprot ID   -
Organism   Helicobacter pylori HPAG1     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 811988..823508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAG1_RS03900 (HPAG1_0775) - 813528..814862 (-) 1335 WP_000548902.1 restriction endonuclease subunit S -
  HPAG1_RS03905 (HPAG1_0776) - 814903..816963 (-) 2061 WP_001158869.1 heavy metal translocating P-type ATPase -
  HPAG1_RS03910 (HPAG1_0777) comM 816988..818508 (-) 1521 WP_000611011.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPAG1_RS03915 (HPAG1_0778) def 818514..819038 (-) 525 WP_001185821.1 peptide deformylase -
  HPAG1_RS03920 (HPAG1_0779) clpP 819043..819630 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPAG1_RS03925 (HPAG1_0780) tig 819651..821006 (-) 1356 WP_001047729.1 trigger factor -
  HPAG1_RS03930 (HPAG1_0781) - 821118..821912 (-) 795 WP_000118156.1 outer membrane protein -
  HPAG1_RS03935 (HPAG1_0782) hpaA 821979..822761 (-) 783 WP_000646673.1 flagellar sheath lipoprotein HpaA -
  HPAG1_RS03940 (HPAG1_0783) moaC 822874..823350 (-) 477 WP_001131540.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57054.05 Da        Isoelectric Point: 8.5412

>NTDB_id=25714 HPAG1_RS03910 WP_000611011.1 816988..818508(-) (comM) [Helicobacter pylori HPAG1]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVGNFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREIMQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHVLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=25714 HPAG1_RS03910 WP_000611011.1 816988..818508(-) (comM) [Helicobacter pylori HPAG1]
ATGATTAACACGATATTTTGCGCGACTATGCAAAGGGGAGTGGCAGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGGGAATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCCAAAGAGGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGTTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCATGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAGGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTTTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCATGTGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.826

100

0.978
  comM Acinetobacter baylyi ADP1

36.008

100

0.364