Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CWD84_RS21965 Genome accession   NZ_CP025001
Coordinates   4265518..4266630 (-) Length   370 a.a.
NCBI ID   WP_060963790.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4260518..4271630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS21950 (CWD84_21945) gyrA 4260606..4263065 (-) 2460 WP_060963789.1 DNA gyrase subunit A -
  CWD84_RS21955 (CWD84_21950) gyrB 4263282..4265198 (-) 1917 WP_060965087.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CWD84_RS21960 (CWD84_21955) remB 4265255..4265500 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  CWD84_RS21965 (CWD84_21960) recF 4265518..4266630 (-) 1113 WP_060963790.1 DNA replication/repair protein RecF Machinery gene
  CWD84_RS21970 (CWD84_21965) rlbA 4266646..4266861 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  CWD84_RS21975 (CWD84_21970) dnaN 4266998..4268134 (-) 1137 WP_060963791.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42472.40 Da        Isoelectric Point: 6.8976

>NTDB_id=257127 CWD84_RS21965 WP_060963790.1 4265518..4266630(-) (recF) [Bacillus siamensis strain SCSIO 05746]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTEQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=257127 CWD84_RS21965 WP_060963790.1 4265518..4266630(-) (recF) [Bacillus siamensis strain SCSIO 05746]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGAGAGAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGTTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCACATAGAACAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTCGCCCCGGAGGACTTAAATCTCGTCAAAGGCAGCCCGCAGGTCAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACTATGCTTGACGTTCTCACTGATCAGCTGATTGA
GGCAGCCGCAAAAGTTGTCGCCAAACGTCTGCAGTTTACGGAGCAGCTTGAAAAATGGGCGCAGCCGATCCATTCGGGCA
TTTCCCGGGGGCTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCTAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGGGGCGTCACCTTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTTTGAAGCTGGCCGAAATAGATTTGATTCATGAAGAAATTGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGACGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment