Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CWD84_RS21735 Genome accession   NZ_CP025001
Coordinates   4223753..4224043 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4218753..4229043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS21720 (CWD84_21715) - 4218975..4220300 (-) 1326 WP_101605623.1 G5 and 3D domain-containing protein -
  CWD84_RS21725 (CWD84_21720) - 4220435..4221202 (-) 768 WP_060963776.1 TatD family hydrolase -
  CWD84_RS21730 (CWD84_21725) metG 4221278..4223269 (-) 1992 WP_060963777.1 methionine--tRNA ligase -
  CWD84_RS21735 (CWD84_21730) abrB 4223753..4224043 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  CWD84_RS21740 (CWD84_21735) rsmI 4224093..4224974 (-) 882 WP_060963778.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CWD84_RS21745 (CWD84_21740) - 4224949..4225248 (-) 300 WP_047478056.1 GIY-YIG nuclease family protein -
  CWD84_RS21750 (CWD84_21745) - 4225235..4225978 (-) 744 WP_049627760.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CWD84_RS21755 (CWD84_21750) yabA 4226039..4226398 (-) 360 WP_016936514.1 replication initiation-control protein YabA -
  CWD84_RS21760 (CWD84_21755) ricT 4226413..4227240 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  CWD84_RS21765 (CWD84_21760) holB 4227243..4228232 (-) 990 WP_060963779.1 DNA polymerase III subunit delta' -
  CWD84_RS21770 (CWD84_21765) - 4228244..4228684 (-) 441 WP_047478049.1 YaaR family protein -
  CWD84_RS21775 (CWD84_21770) darA 4228697..4229026 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=257125 CWD84_RS21735 WP_169510469.1 4223753..4224043(+) (abrB) [Bacillus siamensis strain SCSIO 05746]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=257125 CWD84_RS21735 WP_169510469.1 4223753..4224043(+) (abrB) [Bacillus siamensis strain SCSIO 05746]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAATCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment