Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CWD84_RS17780 Genome accession   NZ_CP025001
Coordinates   3454533..3455324 (-) Length   263 a.a.
NCBI ID   WP_060963296.1    Uniprot ID   A0AAI8N1G2
Organism   Bacillus siamensis strain SCSIO 05746     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 3449533..3460324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS17745 (CWD84_17745) - 3450229..3451089 (-) 861 WP_060963291.1 alpha/beta fold hydrolase -
  CWD84_RS17750 (CWD84_17750) - 3451086..3451418 (-) 333 WP_060963292.1 SdpI family protein -
  CWD84_RS17755 (CWD84_17755) - 3451504..3452031 (-) 528 WP_060963293.1 SH3 domain-containing protein -
  CWD84_RS17760 (CWD84_17760) - 3452161..3452430 (-) 270 WP_016936717.1 YfhJ family protein -
  CWD84_RS17765 (CWD84_17765) - 3452554..3452706 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  CWD84_RS17770 (CWD84_17770) - 3452877..3454070 (-) 1194 WP_101605618.1 MFS transporter -
  CWD84_RS17775 (CWD84_17775) - 3454212..3454526 (-) 315 WP_060963295.1 YfhH family protein -
  CWD84_RS17780 (CWD84_17780) recX 3454533..3455324 (-) 792 WP_060963296.1 recombination regulator RecX Regulator
  CWD84_RS17785 (CWD84_17785) - 3455416..3456315 (+) 900 WP_060963297.1 TIGR01777 family oxidoreductase -
  CWD84_RS17790 (CWD84_17790) - 3456373..3456483 (+) 111 WP_003155504.1 YfhE family protein -
  CWD84_RS17795 (CWD84_17795) - 3456553..3456744 (+) 192 WP_016936722.1 YfhD family protein -
  CWD84_RS17800 (CWD84_17800) - 3456783..3457367 (-) 585 WP_016936723.1 nitroreductase family protein -
  CWD84_RS17805 (CWD84_17805) - 3457444..3458328 (-) 885 WP_060963298.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31159.46 Da        Isoelectric Point: 6.5203

>NTDB_id=257115 CWD84_RS17780 WP_060963296.1 3454533..3455324(-) (recX) [Bacillus siamensis strain SCSIO 05746]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQHGDEAKKAFNRAVDFLSYRMRSEKEV
RDHLKKKETPEMVIPEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDETEMEALKIHAEKAIRKYRYDGSYESRMK
VKQYLFRKGFSIDDIEQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=257115 CWD84_RS17780 WP_060963296.1 3454533..3455324(-) (recX) [Bacillus siamensis strain SCSIO 05746]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAACACTGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGCACGGCGATGAAGCGAAAAAAGCCTTTAACCGCGCCGTAGATTTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGACCATCTGAAGAAAAAAGAAACACCTGAGATGGTCATTCCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCCGAAGCCTATGCAAGCACCCACAAGAAAACAAACGGCAAAGGCCCTGACGTCTTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAGATACAAGAA
GCGCTGAAACATATCGGGAAAATCCTGAAAAAAGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTTCCATTCGACGTGATCAACGCCGCCCTGGAGCAGACGGAGTATGAGAATGATGACGAAACTG
AGATGGAAGCCCTGAAGATTCATGCGGAAAAGGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCAGAATGAAG
GTCAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGAACAATTTTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

80.228

100

0.802

Multiple sequence alignment