Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CWD84_RS16430 Genome accession   NZ_CP025001
Coordinates   3216859..3217437 (-) Length   192 a.a.
NCBI ID   WP_045925287.1    Uniprot ID   A0AAI8N191
Organism   Bacillus siamensis strain SCSIO 05746     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3211859..3222437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS16395 (CWD84_16395) - 3212429..3212788 (+) 360 WP_060963130.1 hypothetical protein -
  CWD84_RS16400 (CWD84_16400) - 3212903..3213103 (+) 201 WP_003155162.1 DUF3311 domain-containing protein -
  CWD84_RS16405 (CWD84_16405) - 3213100..3214569 (+) 1470 WP_060963131.1 sodium:solute symporter family protein -
  CWD84_RS16410 (CWD84_16410) - 3214610..3214922 (+) 313 Protein_3244 YbjQ family protein -
  CWD84_RS16415 (CWD84_16415) - 3214954..3215223 (-) 270 WP_016938305.1 excalibur calcium-binding domain-containing protein -
  CWD84_RS16420 (CWD84_16420) - 3215419..3216129 (+) 711 WP_060963132.1 YrpD family protein -
  CWD84_RS16425 (CWD84_16425) - 3216342..3216713 (-) 372 WP_060963133.1 iron chaperone -
  CWD84_RS16430 (CWD84_16430) comK 3216859..3217437 (-) 579 WP_045925287.1 competence protein ComK Regulator
  CWD84_RS16435 (CWD84_16435) - 3217754..3217987 (+) 234 WP_016938310.1 IDEAL domain-containing protein -
  CWD84_RS16440 (CWD84_16440) - 3218017..3218874 (-) 858 WP_007610477.1 SDR family oxidoreductase -
  CWD84_RS16445 (CWD84_16445) - 3218998..3220521 (+) 1524 WP_060963134.1 FAD-dependent oxidoreductase -
  CWD84_RS22895 - 3220754..3221128 (+) 375 Protein_3252 protoglobin domain-containing protein -
  CWD84_RS22900 - 3221138..3221935 (+) 798 WP_420913154.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22301.59 Da        Isoelectric Point: 8.1411

>NTDB_id=257110 CWD84_RS16430 WP_045925287.1 3216859..3217437(-) (comK) [Bacillus siamensis strain SCSIO 05746]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKIIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=257110 CWD84_RS16430 WP_045925287.1 3216859..3217437(-) (comK) [Bacillus siamensis strain SCSIO 05746]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGATCATTGAAAAAGATTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCGAGCTACGCCGGGAGAAAAGCGGGAACGTATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCATGTTAAAGATTTTCAACCGACCGCATTCGATGATACAGCGGTCACATTCTCAAACGGCAAGACGATGGAGCTGG
AAGTATCTTATCATTCTTTTGAAAACCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACTAAAATGATTTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

83.333

100

0.833

Multiple sequence alignment