Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CWD84_RS15965 Genome accession   NZ_CP025001
Coordinates   3128457..3130286 (-) Length   609 a.a.
NCBI ID   WP_099745180.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3123457..3135286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS15935 (CWD84_15935) - 3124028..3124663 (-) 636 WP_016938218.1 GTP pyrophosphokinase -
  CWD84_RS15940 (CWD84_15940) - 3124691..3125056 (-) 366 WP_016938219.1 hypothetical protein -
  CWD84_RS15945 (CWD84_15945) - 3125181..3125756 (+) 576 WP_060963080.1 CYTH domain-containing protein -
  CWD84_RS15950 (CWD84_15950) - 3125761..3126447 (+) 687 WP_060963081.1 lytic transglycosylase domain-containing protein -
  CWD84_RS15955 (CWD84_15955) - 3126672..3127070 (+) 399 WP_016938222.1 thiol management oxidoreductase -
  CWD84_RS15960 (CWD84_15960) spxH 3127067..3127969 (+) 903 WP_060963082.1 protease adaptor protein SpxH -
  CWD84_RS22410 - 3128255..3128422 (+) 168 WP_016938224.1 hypothetical protein -
  CWD84_RS15965 (CWD84_15965) pepF 3128457..3130286 (-) 1830 WP_099745180.1 oligoendopeptidase F Regulator
  CWD84_RS15970 (CWD84_15970) - 3130515..3131675 (-) 1161 WP_060963083.1 competence protein CoiA family protein -
  CWD84_RS15975 (CWD84_15975) mecA 3131826..3132482 (-) 657 WP_060963084.1 adaptor protein MecA Regulator
  CWD84_RS15980 (CWD84_15980) - 3132758..3133414 (+) 657 WP_060963085.1 TerC family protein -
  CWD84_RS15985 (CWD84_15985) spx 3133472..3133867 (-) 396 WP_003327578.1 transcriptional regulator Spx -
  CWD84_RS15990 (CWD84_15990) - 3134046..3134624 (-) 579 WP_045925331.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 69773.52 Da        Isoelectric Point: 5.4412

>NTDB_id=257102 CWD84_RS15965 WP_099745180.1 3128457..3130286(-) (pepF) [Bacillus siamensis strain SCSIO 05746]
MTEENKAAQLPDRSEVKAEHTWRLEDIFPSDEAWNKEFQAVKELIPNLSSFKGTLAHSADNLYAALTAQDEVTSRLGKLY
AYAHMRSDQDTGNSFYQGLNDKAASLYSQAASATAYIEPEILAIQEDKLHQFILEKEELKLYSHAIEEITKQRPHVLSER
EEALLAEASEALSSPSNTFSVLNNADITFPSIKDEDGKETQITHGNFINFLESSDREVRKNAFKAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLIKTINKHLPLLHRYIDLRKKVLGLDEVHIYDLYTPLVKDSGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRSGAYSSGTYGTNPYILMNWHDNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTTNEALLGEYMLNSLKDEKQRLYLLNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLSKLYYDLNKKYFGDNMVIDKEISLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVERYTEFL
KAGSSEYPIDILKKAGVDMTSPEPIEAACKMFEEKLNEMEELLSKVNPS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=257102 CWD84_RS15965 WP_099745180.1 3128457..3130286(-) (pepF) [Bacillus siamensis strain SCSIO 05746]
ATGACTGAGGAAAATAAAGCAGCACAGCTGCCTGACAGAAGTGAAGTAAAGGCAGAGCATACATGGAGACTAGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCGGTTAAAGAATTAATTCCGAATTTATCTTCCTTTAAAGGCA
CGCTTGCTCATTCAGCCGATAATTTATACGCGGCGCTTACCGCACAGGATGAAGTGACGAGCCGTCTGGGGAAACTTTAT
GCATACGCGCATATGCGTTCAGACCAGGATACGGGAAATTCTTTCTACCAAGGGCTGAACGACAAAGCCGCAAGTCTGTA
TTCTCAGGCTGCCAGCGCGACTGCTTATATTGAACCGGAAATTCTGGCGATTCAGGAGGACAAGCTGCATCAGTTTATTC
TGGAAAAAGAGGAGCTGAAGCTTTATTCCCATGCAATTGAAGAAATTACAAAACAGCGTCCGCACGTGCTGAGTGAAAGA
GAAGAGGCCCTGCTTGCGGAAGCGTCAGAAGCGCTGTCTTCGCCTTCCAATACATTCAGTGTGTTAAATAACGCTGATAT
TACGTTTCCGTCGATTAAAGATGAAGACGGCAAGGAAACTCAAATCACACACGGCAACTTTATTAATTTTCTGGAAAGCA
GCGACCGGGAAGTCCGTAAAAACGCCTTTAAAGCCGTATATAAAACATACGGACAGTATAAAAACACAATGGCGACTACA
CTCAGCGGCACTGTGAAAAAAGACAATTTCTACGCCCGCGTGAAAAAATACAAATCAGCACGGGAAGCGGCTTTATCCAA
TAACAGCATCCCTGAAGAAGTTTATGATAACCTGATCAAAACGATCAATAAACACCTTCCGTTATTACACCGTTACATTG
ATCTGCGGAAAAAGGTGCTCGGCCTTGATGAAGTCCATATTTATGACCTGTACACACCGCTTGTAAAAGATTCGGGAATG
AAGGTCACATATGAGGAAGCAAAAGATTATATGCTCAAAGGGCTTGCTCCGTTAGGCGAGGAATACGCGTCTATTTTAAA
AGAAGGACTTGAAAACCGCTGGGTCGATGTATACGAAAACAAAGGAAAACGCAGCGGTGCTTATTCGTCCGGTACATACG
GCACGAATCCGTACATCTTGATGAACTGGCATGACAATGTCAACAACCTGTTTACGCTCGTTCACGAGTTCGGCCATTCC
GTGCACAGCTATTATACGAGAAAATATCAGCCGTATCCGTACGGAAACTACAGCATTTTTGTCGCTGAAGTCGCTTCTAC
GACCAATGAAGCGCTGCTTGGTGAATACATGCTGAACAGCTTAAAAGATGAAAAACAGCGTCTGTACCTGCTCAACCACA
TGCTTGAAGGTTTCAGAGGCACAGTCTTCAGACAGACGATGTTCGCTGAATTTGAGCATCTGATTCATACGAAAGCGCAA
GAAGGCGAGCCGCTGACGCCTGAACTGCTGAGCAAGCTTTATTATGATCTCAATAAAAAGTATTTCGGAGACAACATGGT
GATTGATAAAGAAATCAGCCTGGAATGGTCAAGAATTCCGCATTTCTATTACAATTATTATGTGTATCAATATGCGACAG
GCTACAGTGCGGCCCAAGCGCTGAGCAGCCAGATCTTAAAAGAAGGCAAGCCTGCGGTTGAGCGTTATACCGAATTCTTA
AAAGCGGGAAGCTCAGAATACCCGATCGACATACTGAAAAAAGCGGGAGTCGATATGACATCGCCTGAACCGATCGAGGC
GGCCTGCAAAATGTTTGAAGAGAAACTGAATGAAATGGAAGAACTGCTTTCGAAAGTGAACCCTTCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

97.537

0.488

Multiple sequence alignment