Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CWD84_RS14135 Genome accession   NZ_CP025001
Coordinates   2817671..2817955 (-) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus siamensis strain SCSIO 05746     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812671..2822955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS14115 (CWD84_14115) ade 2812777..2814510 (-) 1734 WP_060962893.1 adenine deaminase -
  CWD84_RS14120 (CWD84_14120) ktrC 2814660..2815325 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CWD84_RS14125 (CWD84_14125) - 2815366..2816193 (-) 828 WP_082761601.1 gamma-glutamylcyclotransferase -
  CWD84_RS14130 (CWD84_14130) - 2816195..2817499 (-) 1305 WP_060962895.1 ATP-binding protein -
  CWD84_RS14135 (CWD84_14135) abrB 2817671..2817955 (-) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CWD84_RS14145 (CWD84_14145) mreBH 2818226..2819233 (+) 1008 WP_029575211.1 cell shape-determining protein MreBH -
  CWD84_RS14150 (CWD84_14150) - 2819305..2819439 (+) 135 WP_101605501.1 protein YkpC -
  CWD84_RS14155 (CWD84_14155) - 2819540..2820772 (+) 1233 WP_060962896.1 aminopeptidase -
  CWD84_RS14160 (CWD84_14160) - 2820802..2821710 (-) 909 WP_060962897.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=257097 CWD84_RS14135 WP_013352109.1 2817671..2817955(-) (abrB) [Bacillus siamensis strain SCSIO 05746]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=257097 CWD84_RS14135 WP_013352109.1 2817671..2817955(-) (abrB) [Bacillus siamensis strain SCSIO 05746]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTAGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTTGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCCGACAATCAGGAATACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553

Multiple sequence alignment