Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CWD84_RS12665 Genome accession   NZ_CP025001
Coordinates   2420373..2420744 (-) Length   123 a.a.
NCBI ID   WP_231937532.1    Uniprot ID   -
Organism   Bacillus siamensis strain SCSIO 05746     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2415373..2425744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS12625 (CWD84_12625) - 2415409..2415762 (+) 354 WP_016936029.1 DMT family transporter -
  CWD84_RS12630 (CWD84_12630) - 2415776..2416228 (-) 453 WP_060962728.1 OsmC family protein -
  CWD84_RS12635 (CWD84_12635) - 2416288..2416995 (-) 708 WP_060962729.1 poly-gamma-glutamate hydrolase family protein -
  CWD84_RS12640 (CWD84_12640) - 2417251..2417484 (-) 234 WP_060962730.1 hypothetical protein -
  CWD84_RS12645 (CWD84_12645) - 2417649..2418977 (+) 1329 WP_060962731.1 S8 family peptidase -
  CWD84_RS12655 (CWD84_12655) - 2419160..2419522 (+) 363 WP_016936035.1 hypothetical protein -
  CWD84_RS12660 (CWD84_12660) - 2419557..2420312 (-) 756 WP_060962732.1 YoaK family protein -
  CWD84_RS12665 (CWD84_12665) nucA/comI 2420373..2420744 (-) 372 WP_231937532.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CWD84_RS12670 (CWD84_12670) - 2421090..2422301 (+) 1212 WP_060962734.1 cytochrome P450 family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13395.87 Da        Isoelectric Point: 6.7105

>NTDB_id=257092 CWD84_RS12665 WP_231937532.1 2420373..2420744(-) (nucA/comI) [Bacillus siamensis strain SCSIO 05746]
MSAGTHSENTARAASRYDQVLYFPLLKYPETGNHIKDAISAGHSDICTIDRGGAEDRRKESLKGIPTKPGFDRDEWPMAV
CTEGGAGADIRYVTPSDNRGAGSWVGNQMSRYSDGTKVLFIVQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=257092 CWD84_RS12665 WP_231937532.1 2420373..2420744(-) (nucA/comI) [Bacillus siamensis strain SCSIO 05746]
ATGAGCGCCGGGACTCATTCTGAGAATACTGCCCGAGCCGCGTCCAGATACGATCAGGTGCTTTATTTCCCGCTGTTAAA
ATATCCGGAGACGGGAAATCATATAAAAGACGCCATTTCGGCAGGGCACTCTGACATTTGTACAATTGATCGCGGCGGAG
CTGAGGATAGAAGGAAAGAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCGATGGCAGTC
TGTACAGAAGGCGGGGCTGGAGCTGATATCAGATATGTAACCCCTTCGGACAATCGCGGGGCCGGCTCATGGGTTGGAAA
TCAAATGAGCAGGTATTCCGACGGCACGAAAGTATTATTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.963

87.805

0.553

Multiple sequence alignment