Detailed information NTG0257057

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CWD84_RS01835
• Genome accession: NZ_CP025001
• Coordinates: 351929..353074 (-)
• Length: 381 a.a.
• NCBI ID: WP_082761635.1
• Uniprot ID: A0AAI8HKG6
• Organism: Bacillus siamensis strain SCSIO 05746
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 346929..358074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CWD84_RS01810 (CWD84_01810)	-	347214..347645 (+)	432	WP_060964021.1	hypothetical protein	-
CWD84_RS01815 (CWD84_01815)	-	347670..349742 (-)	2073	WP_060964022.1	transglycosylase domain-containing protein	-
CWD84_RS01820 (CWD84_01820)	speE	349942..350772 (+)	831	WP_060964023.1	spermidine synthase	-
CWD84_RS01825 (CWD84_01825)	speB	350831..351703 (+)	873	WP_060964024.1	agmatinase	-
CWD84_RS01830 (CWD84_01830)	-	351826..351945 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
CWD84_RS01835 (CWD84_01835)	rapF	351929..353074 (-)	1146	WP_082761635.1	Rap family tetratricopeptide repeat protein	Regulator
CWD84_RS01840 (CWD84_01840)	-	353366..353794 (+)	429	WP_003151069.1	DUF1934 domain-containing protein	-
CWD84_RS01845 (CWD84_01845)	argS	353791..355461 (+)	1671	WP_060964025.1	arginine--tRNA ligase	-
CWD84_RS01850 (CWD84_01850)	narK	355596..356783 (+)	1188	WP_060964026.1	nitrate transporter NarK	-
CWD84_RS01855 (CWD84_01855)	fnr	356884..357600 (+)	717	WP_060964027.1	fumarate/nitrate reduction transcriptional regulator Fnr	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45784.27 Da
• Isoelectric Point: 5.0694

>NTDB_id=257057 CWD84_RS01835 WP_082761635.1 351929..353074(-) (rapF) [Bacillus siamensis strain SCSIO 05746]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=257057 CWD84_RS01835 WP_082761635.1 351929..353074(-) (rapF) [Bacillus siamensis strain SCSIO 05746]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATTAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTAGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAGTATCTTTCAGCCATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGAAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533