Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   DL800_RS15870 Genome accession   NZ_CP029692
Coordinates   2583135..2584559 (+) Length   474 a.a.
NCBI ID   WP_000132553.1    Uniprot ID   -
Organism   Escherichia coli strain SD134209     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2578135..2589559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL800_RS15815 (DL800_15815) - 2578178..2578471 (+) 294 WP_001111307.1 phage anti-RecBCD protein -
  DL800_RS15820 (DL800_15820) - 2578482..2578649 (+) 168 WP_032353655.1 DUF2737 family protein -
  DL800_RS15825 (DL800_15825) - 2578646..2578945 (+) 300 WP_000109677.1 hypothetical protein -
  DL800_RS15830 (DL800_15830) - 2578947..2579501 (+) 555 WP_001033097.1 ead/Ea22-like family protein -
  DL800_RS30950 - 2579501..2579677 (+) 177 WP_001261535.1 hypothetical protein -
  DL800_RS15835 (DL800_15835) - 2579674..2579862 (+) 189 WP_000797282.1 hypothetical protein -
  DL800_RS15840 (DL800_15840) - 2579864..2580073 (+) 210 WP_000951710.1 hypothetical protein -
  DL800_RS15845 (DL800_15845) - 2580178..2580873 (+) 696 WP_042352438.1 hypothetical protein -
  DL800_RS15850 (DL800_15850) - 2580866..2581150 (+) 285 WP_000002108.1 ASCH domain-containing protein -
  DL800_RS15855 (DL800_15855) - 2581222..2581521 (+) 300 WP_000227131.1 hypothetical protein -
  DL800_RS15860 (DL800_15860) - 2581603..2581794 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  DL800_RS15865 (DL800_15865) - 2581775..2582953 (-) 1179 WP_001007947.1 site-specific integrase -
  DL800_RS15870 (DL800_15870) sbcB 2583135..2584559 (+) 1425 WP_000132553.1 exodeoxyribonuclease I Machinery gene
  DL800_RS15875 (DL800_15875) tsuB 2584602..2584829 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  DL800_RS15880 (DL800_15880) tsuA 2584843..2585901 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  DL800_RS15885 (DL800_15885) plaP 2586080..2587438 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  DL800_RS15890 (DL800_15890) yoeI 2587428..2587490 (-) 63 WP_010723108.1 membrane protein YoeI -
  DL800_RS15895 (DL800_15895) yeeY 2587705..2588634 (-) 930 WP_000803331.1 LysR substrate-binding domain-containing protein -
  DL800_RS15900 (DL800_15900) yeeZ 2588680..2589504 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54426.67 Da        Isoelectric Point: 5.3498

>NTDB_id=256987 DL800_RS15870 WP_000132553.1 2583135..2584559(+) (sbcB) [Escherichia coli strain SD134209]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=256987 DL800_RS15870 WP_000132553.1 2583135..2584559(+) (sbcB) [Escherichia coli strain SD134209]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACTGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584