Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DL800_RS15460 Genome accession   NZ_CP029692
Coordinates   2535585..2536061 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain SD134209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2530585..2541061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL800_RS30625 - 2531334..2531549 (+) 216 Protein_2553 TonB-dependent receptor -
  DL800_RS15420 (DL800_15420) - 2531592..2531864 (-) 273 Protein_2554 integrase core domain-containing protein -
  DL800_RS15430 (DL800_15430) - 2531993..2532721 (+) 729 Protein_2555 patatin-like phospholipase family protein -
  DL800_RS15435 (DL800_15435) - 2532857..2533540 (+) 684 WP_000775497.1 hypothetical protein -
  DL800_RS15440 (DL800_15440) - 2533556..2533966 (+) 411 WP_000846711.1 hypothetical protein -
  DL800_RS15450 (DL800_15450) - 2534187..2535008 (+) 822 WP_001234505.1 DUF932 domain-containing protein -
  DL800_RS15455 (DL800_15455) - 2535090..2535569 (+) 480 WP_000860076.1 antirestriction protein -
  DL800_RS15460 (DL800_15460) radC 2535585..2536061 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  DL800_RS15465 (DL800_15465) yeeT 2536130..2536351 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  DL800_RS15470 (DL800_15470) cbeA 2536425..2536793 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DL800_RS15475 (DL800_15475) cbtA 2536882..2537255 (+) 374 Protein_2563 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DL800_RS15480 (DL800_15480) yeeW 2537252..2537446 (+) 195 WP_000988599.1 DUF5983 family protein -
  DL800_RS15485 (DL800_15485) - 2537492..2537572 (+) 81 Protein_2565 hypothetical protein -
  DL800_RS31750 (DL800_15495) - 2538061..2538243 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  DL800_RS15500 (DL800_15500) tmaR 2538344..2538673 (-) 330 WP_000450409.1 DUF496 family protein -
  DL800_RS15505 (DL800_15505) yeeA 2538845..2539904 (-) 1060 Protein_2568 FUSC family protein -
  DL800_RS15510 (DL800_15510) sbmC 2540102..2540575 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=256986 DL800_RS15460 WP_001186773.1 2535585..2536061(+) (radC) [Escherichia coli strain SD134209]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=256986 DL800_RS15460 WP_001186773.1 2535585..2536061(+) (radC) [Escherichia coli strain SD134209]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment