Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DL800_RS08305 Genome accession   NZ_CP029692
Coordinates   1285382..1285858 (+) Length   158 a.a.
NCBI ID   WP_001345397.1    Uniprot ID   -
Organism   Escherichia coli strain SD134209     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1280382..1290858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL800_RS08280 (DL800_08280) - 1283312..1283632 (+) 321 Protein_1224 hypothetical protein -
  DL800_RS08295 (DL800_08295) - 1283972..1284790 (+) 819 WP_001234682.1 DUF932 domain-containing protein -
  DL800_RS08300 (DL800_08300) - 1284881..1285366 (+) 486 WP_000214398.1 antirestriction protein -
  DL800_RS08305 (DL800_08305) radC 1285382..1285858 (+) 477 WP_001345397.1 RadC family protein Machinery gene
  DL800_RS08310 (DL800_08310) - 1285921..1286142 (+) 222 WP_001220314.1 DUF987 domain-containing protein -
  DL800_RS08315 (DL800_08315) - 1286305..1286679 (+) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DL800_RS08320 (DL800_08320) - 1286726..1287100 (+) 375 WP_000854914.1 TA system toxin CbtA family protein -
  DL800_RS08325 (DL800_08325) - 1287097..1287588 (+) 492 WP_000976857.1 DUF5983 family protein -
  DL800_RS08330 (DL800_08330) - 1287600..1287797 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  DL800_RS08335 (DL800_08335) - 1287882..1288724 (+) 843 WP_001280481.1 DUF4942 domain-containing protein -
  DL800_RS08345 (DL800_08345) ghrA 1289195..1290133 (+) 939 WP_000351317.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17703.30 Da        Isoelectric Point: 6.9242

>NTDB_id=256974 DL800_RS08305 WP_001345397.1 1285382..1285858(+) (radC) [Escherichia coli strain SD134209]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRTAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=256974 DL800_RS08305 WP_001345397.1 1285382..1285858(+) (radC) [Escherichia coli strain SD134209]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTACGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.846

74.051

0.399